RetrogeneDB ID: | retro_ocun_1309 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:89986823..89987345(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025786 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHEB | ||
Ensembl ID: | ENSOCUG00000013173 | ||
Aliases: | None | ||
Description: | Ras homolog enriched in brain [Source:HGNC Symbol;Acc:10011] |
Percent Identity: | 95.4 % |
Parental protein coverage: | 94.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF |
M.QSKSRKIAILGY.S.GKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ.EYSIF | |
Retrocopy | MSQSKSRKIAILGYQSMGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQEEYSIF |
Parental | PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES |
PQTYSIDINGYI.VYSVTSIKSFEVIKVI.GKLLDMV.KVQIPIMLVGNKKDLHMERVISYEEGKALAES | |
Retrocopy | PQTYSIDINGYIIVYSVTSIKSFEVIKVIPGKLLDMVEKVQIPIMLVGNKKDLHMERVISYEEGKALAES |
Parental | WNAAFLESSAKENQTAVDVFRRIILEAEKIDGAA |
WN.AFLESSAKENQTAVDVFRRIILEAEKIDGAA | |
Retrocopy | WNTAFLESSAKENQTAVDVFRRIILEAEKIDGAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .28 RPM | 83 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .12 RPM |
SRP017611_liver | 0 .15 RPM | 15 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031861 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020414 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007541 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016493 | 1 retrocopy | |
Homo sapiens | ENSG00000106615 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014675 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000691 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004309 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028945 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013173 | 1 retrocopy |
retro_ocun_1309 ,
|
Oryctolagus cuniculus | ENSOCUG00000016881 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004544 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000001286 | 2 retrocopies |