RetrogeneDB ID: | retro_ocun_1332 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:146971791..146972238(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024602 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSOCUG00000015537 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 76. % |
Parental protein coverage: | 93.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSSRLATLPENPPAIDWAYYKANVAKAGLVDDF |
M...KLALKAID..AFGEIIPRN.K..ANSLKSWNETLSS.L..LP.NP...DWA.YKANVAKAGLVDDF | |
Retrocopy | MVRHKLALKAIDQLAFGEIIPRNHKVTANSLKSWNETLSSELVALPDNPLSVDWASYKANVAKAGLVDDF |
Parental | EKKFNALKVPVPEDKYTALVDAEEKEDVKSCAEFVSLSKARIEAYEKQLEKMRNIIPFDQMTIEDLNEAF |
EK..NALKVPVPEDK.T..VDAEEK.DV.SC.EF.SLSK.RIE.YEKQL.KM..I..FD.MTIEDLNE.F | |
Retrocopy | EKRMNALKVPVPEDKCTVPVDAEEK-DVRSCVEFMSLSKPRIEEYEKQLDKMKTITTFDLMTIEDLNEVF |
Parental | PETKLDKKKY |
.ETK.DKKKY | |
Retrocopy | SETKSDKKKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 158 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 283 .49 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |