RetrogeneDB ID: | retro_cpor_1429 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_80:4571187..4571434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSCPOG00000004022 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.95 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EFEKKFNALKVPVPEDKYTAL-VDAEEKEDVKSCAEFVSLSKARIVEYEKQLEKMNNIIPF-DQMTIEDL |
E....F.ALKVPV.E.KYTA..V.AEEKED..SC.EFV.LSK......EK.LEKM..IIPF...MTIED. | |
Retrocopy | EYPVQFSALKVPVQEEKYTAR<VNAEEKEDGESCVEFVPLSKP*VTKLEK*LEKMKKIIPF<CRMTIEDI |
Parental | NEVFPETKLDKKKYPY |
N.VFPET.LD.KKYP. | |
Retrocopy | NAVFPETELD-KKYPF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 149 .91 RPM |
SRP017611_liver | 0 .00 RPM | 93 .28 RPM |
SRP040447_lung | 0 .00 RPM | 37 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 158 .04 RPM |