RetrogeneDB ID: | retro_ocun_1626 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018723:2105837..2106371(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003932 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSOCUG00000008696 | ||
Aliases: | None | ||
Description: | CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164] |
Percent Identity: | 99.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQ |
MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQ | |
Retrocopy | MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQ |
Parental | ED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR |
ED.ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR | |
Retrocopy | EDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR |
Parental | CGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA |
CGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA | |
Retrocopy | CGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .44 RPM | 20 .14 RPM |
SRP017611_kidney | 9 .93 RPM | 19 .16 RPM |
SRP017611_liver | 8 .48 RPM | 15 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012159 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017430 | 1 retrocopy | |
Equus caballus | ENSECAG00000009512 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008408 | 5 retrocopies | |
Felis catus | ENSFCAG00000028042 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002502 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008696 | 2 retrocopies |
retro_ocun_1626 , retro_ocun_208,
|
Otolemur garnettii | ENSOGAG00000013898 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015070 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011874 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017132 | 1 retrocopy |