RetrogeneDB ID: | retro_ocun_1781 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018889:198577..198867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000027189 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.45 % |
Parental protein coverage: | 66.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GVMYYKFSGFTQKLTGAWASDAYFPQGLKPVV-STEAPPIIFATPTKLTSNSPAYDYAGKNKVPELQKFF |
G..YYKFSGF.QKL..AWA.D.YFP.GLKPVV.S.E.PPIIF..P..L.S.SP..DY..KNKV.ELQKFF | |
Retrocopy | GIKYYKFSGFPQKLARAWALDMYFPHGLKPVV<SIEVPPIIFVSPSQLASKSPT*DYPRKNKVTELQKFF |
Parental | QKSDGVPIHLKRGLPDQMLYRTTMALTV |
QKSD.VPIHL.RGLPDQM.Y.TTM.LTV | |
Retrocopy | QKSDNVPIHLNRGLPDQMFYLTTMVLTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 32 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .34 RPM |
SRP017611_liver | 0 .00 RPM | 6 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032040 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014705 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000011940 | 1 retrocopy | |
Homo sapiens | ENSG00000115944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010739 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016278 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008875 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024248 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016666 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027189 | 3 retrocopies |
retro_ocun_1617, retro_ocun_1781 , retro_ocun_28,
|
Otolemur garnettii | ENSOGAG00000016029 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011865 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012014 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012922 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014124 | 3 retrocopies |