RetrogeneDB ID: retro_ogar_114

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873659.1:4101110..4101455(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000030358
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016029
• Aliases: None
• Description: None

Sequence

>retro_ogar_114
ATGTATTACAAGTTTAGCGGCTTCACGCAGAAGTTGATGGGAGCATGGGCTTCGGACGCCTATAGTCCGCAGGGATTAAA
GCCTGTGGTTTCCACAGAGGCACCACCTATCATATTTGCCACACCAACCAAACTGACCTCTGATTCCACTGCATATGATT
ATGCTGGGAAAAACAAGGTTCCAGAGCTGCAGAAGTTTTTCCAGAAAGGCGATGGTGTGCCTGTCCACCTGAAACGAGGC
CTGCCTGACCAAATGCTTTACAGGACCACCATGGCGCTGACTGTGGGAGGGACCATCTACTGCCTGATTGCCCTCTACAT
GGCTTCACAACCCAGAAACAAATGA

Alignment

ORF - retro_ogar_114 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.39 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MYYKFSGFTQKLMGAWASDAYSPQQGLKPVVSTEAPPIIFATPTKLTSNSTAYDYAGKNKVPELQKFFQK
          MYYKFSGFTQKLMGAWASDAYSPQ.GLKPVVSTEAPPIIFATPTKLTS.STAYDYAGKNKVPELQKFFQK
Retrocopy MYYKFSGFTQKLMGAWASDAYSPQ-GLKPVVSTEAPPIIFATPTKLTSDSTAYDYAGKNKVPELQKFFQK

Parental  ADGVPVHLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPRNK
          .DGVPVHLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPRNK
Retrocopy GDGVPVHLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPRNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_114 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032040	1 retrocopy	retro_cfam_1847,
Callithrix jacchus	ENSCJAG00000014705	1 retrocopy	retro_cjac_1492,
Echinops telfairi	ENSETEG00000011940	1 retrocopy	retro_etel_650,
Homo sapiens	ENSG00000115944	1 retrocopy	retro_hsap_825,
Gorilla gorilla	ENSGGOG00000010739	1 retrocopy	retro_ggor_674,
Macaca mulatta	ENSMMUG00000016278	1 retrocopy	retro_mmul_110,
Mustela putorius furo	ENSMPUG00000008875	1 retrocopy	retro_mputfur_97,
Mus musculus	ENSMUSG00000024248	2 retrocopies	retro_mmus_32, retro_mmus_926,
Nomascus leucogenys	ENSNLEG00000016666	1 retrocopy	retro_nleu_258,
Oryctolagus cuniculus	ENSOCUG00000027189	3 retrocopies	retro_ocun_1617, retro_ocun_1781, retro_ocun_28,
Otolemur garnettii	ENSOGAG00000016029	1 retrocopy	retro_ogar_114 ,
Pan troglodytes	ENSPTRG00000011865	1 retrocopy	retro_ptro_575,
Sarcophilus harrisii	ENSSHAG00000012014	1 retrocopy	retro_shar_479,
Ictidomys tridecemlineatus	ENSSTOG00000012922	1 retrocopy	retro_itri_21,
Tupaia belangeri	ENSTBEG00000014124	3 retrocopies	retro_tbel_2384, retro_tbel_4472, retro_tbel_4545,