RetrogeneDB ID: | retro_ocun_43 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:144761960..144762536(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000017602 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSOCUG00000016115 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 70.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPL |
MQ.IKCVVVGDGAVGKTCLLI.YTTNAFP.EYIPTVFDNYSA...VD...VNL.LWDTAGQE.YDRLR.L | |
Retrocopy | MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTL |
Parental | SYPQTDVFLICFSLVSPASYENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYP |
SYPQT.VF.ICFS..SP.SYENVR.KW.PEV.HHCP..PI.LVGTK.DLR...DT...LKE...APIT.. | |
Retrocopy | SYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQ |
Parental | QGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRPCSIL |
QG.ALAK.I..V.YLECSAL.Q.G.K.VF.EA.RAVL.P.P.....R.C..L | |
Retrocopy | QGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPTPIK-RGRSCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .69 RPM | 2 .21 RPM |
SRP017611_kidney | 15 .51 RPM | 2 .33 RPM |
SRP017611_liver | 9 .09 RPM | 4 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_28 |
Gorilla gorilla | retro_ggor_188 |
Pongo abelii | retro_pabe_21 |
Macaca mulatta | retro_mmul_210 |
Mus musculus | retro_mmus_234 |
Rattus norvegicus | retro_rnor_230 |