RetrogeneDB ID: | retro_eeur_20 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_222560:9252..9696(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000009235 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSEEUG00000009509 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 62.84 % |
Parental protein coverage: | 77.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG |
M....P..LGL.DTAGQEDYDRLRPLSYPQTD.FL.CFSLVS..S.ENV..KW.PE..HHCP.TP..LVG | |
Retrocopy | MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDAFLVCFSLVSASSFENVKEKWVPEITHHCPKTPFLLVG |
Parental | TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPARP |
T..DLRDD..TIEKL...K..PIT......LA.....VKY.ECSALTQ.GLK.VFDEAI.A.L.P.P... | |
Retrocopy | TQIDLRDDASTIEKLAKNKEKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPK |
Parental | QKRPCSIL |
..R.C..L | |
Retrocopy | KSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 52 .05 RPM | 2 .90 RPM |
SRP017611_kidney | 64 .70 RPM | 2 .81 RPM |
SRP017611_liver | 25 .56 RPM | 9 .32 RPM |