RetrogeneDB ID: | retro_ocun_810 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:78923791..78924307(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSOCUG00000001456 | ||
Aliases: | EIF4E, EIF-4E | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P29338] |
Percent Identity: | 79.19 % |
Parental protein coverage: | 67.84 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | GAVVRSDRSKMATVEPETTPTPNPPPAEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL |
G.VV.SDRSKMATVEPETT..PNPP...EEKTESNQEVANPEHYIKHPLQNR.AL.F.KNDKS.TWQANL | |
Retrocopy | GEVV*SDRSKMATVEPETTLIPNPPLTKEEKTESNQEVANPEHYIKHPLQNR*ALCFLKNDKSTTWQANL |
Parental | RLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFW |
RLISKFD.VEDF.ALYNHI.LSSNLMPGCDYSLFKD.IEPMWEDEK.K.GG..LI.LNK.Q.R....... | |
Retrocopy | RLISKFDSVEDFSALYNHI*LSSNLMPGCDYSLFKDDIEPMWEDEKKKGGGQCLIALNK-QQRQVTSIAF |
Parental | LETLLCLIGESFDDYSDDVCGAVVNVRAKGDKI |
...LLCL..ESFDDYSDDVCGA.V.VRAKGDKI | |
Retrocopy | G*ILLCLLRESFDDYSDDVCGAIVKVRAKGDKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .26 RPM |
SRP017611_liver | 0 .00 RPM | 5 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_585 |