RetrogeneDB ID: | retro_cpor_169 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_1:22484760..22485164(+) | ||
Located in intron of: | ENSCPOG00000006307 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSCPOG00000005383 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.97 % |
Parental protein coverage: | 62.21 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLIT |
FFKNDKSK.WQANL.LISKFDTVEDFWALYNHIQLS.NLMPGCDYSLFKD.IEPMWEDEKNKRGG..LIT | |
Retrocopy | FFKNDKSKIWQANL*LISKFDTVEDFWALYNHIQLSTNLMPGCDYSLFKDSIEPMWEDEKNKRGG**LIT |
Parental | LNKQQRR-SDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVQHIGR |
LNKQQR..SDLD.FWL.TLLCL.GESFDDYSDDVCGAVVNV.AKG.K.AIWTTECENREAVQH.GR | |
Retrocopy | LNKQQRQ<SDLDHFWLGTLLCLSGESFDDYSDDVCGAVVNVSAKGGKAAIWTTECENREAVQHTGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .00 RPM |
SRP017611_liver | 0 .00 RPM | 24 .24 RPM |
SRP040447_lung | 0 .00 RPM | 25 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 20 .83 RPM |