RetrogeneDB ID: | retro_rnor_781 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:10873510..10873841(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000040247 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSRNOG00000013183 | ||
Aliases: | None | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P63074] |
Percent Identity: | 73.21 % |
Parental protein coverage: | 51.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VEPETTPTTNPPPAEEEK-TESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDF |
.EPETTPTTNPPPAEEEK.TE.NQEVAN.EHYI.H.LQNRWAL.....DKS..W..NL..IS.FD..EDF | |
Retrocopy | LEPETTPTTNPPPAEEEK>TEFNQEVANTEHYI*HSLQNRWALXXXXSDKSN-WETNLQFISMFDIIEDF |
Parental | WALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWL |
WALYN.IQL.SNL.P.CDYSLFKDGI..MWE.EK.K.GGR.L | |
Retrocopy | WALYNYIQLFSNLTPCCDYSLFKDGIDSMWEYEKYKQGGRCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .15 RPM |
SRP017611_liver | 0 .00 RPM | 19 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1478 |