RetrogeneDB ID: | retro_ocun_1933 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:62903204..62903666(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSOCUG00000008933 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 86.25 % |
Parental protein coverage: | 86.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLCTGSSSGATAPDSLTMYACSKFVSTPSLARSTSQLLSRPLSAVVLKRPEPLTDEVPYSVAAPCPLTPL |
LLCTGSSS.ATAPDSLTMYACSKFVS.PSL.RSTSQLLS.PLSAVVLKRPE.LTDE....VAAPCPLTPL | |
Retrocopy | LLCTGSSSHATAPDSLTMYACSKFVSMPSLVRSTSQLLSQPLSAVVLKRPELLTDEHLSRVAAPCPLTPL |
Parental | L--QSRSFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFA |
L..QSRSFQTS..SRDIDTAAKF.GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL....FSYAILGF. | |
Retrocopy | LQSQSRSFQTSTISRDIDTAAKFTGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL----FSYAILGF- |
Parental | LSEAMGLFCLMVAFLILFAM |
.SEAMGLFCLMVAFLIL..M | |
Retrocopy | -SEAMGLFCLMVAFLILYSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .72 RPM | 84 .00 RPM |
SRP017611_kidney | 4 .76 RPM | 179 .20 RPM |
SRP017611_liver | 0 .62 RPM | 40 .16 RPM |