RetrogeneDB ID:

retro_ogar_843

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873529.1:14825648..14826031(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000025493
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PMP2
Ensembl ID:ENSOGAG00000012166
Aliases:None
Description:peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117]


Retrocopy-Parental alignment summary:






>retro_ogar_843
AGTCAACAGCTTGCAGGAAGATGGCGCCTCGTGGACAGCAAAGGCTTTGATGAATACATGAAGGAACTAGGAGTGGGGCT
AGCTCTACGAAAAATGGGTGCAATGGCTAAGCCACATTGTGTCATCACTTGTGACGGCAAAAACCTCGCCATAAAAATGG
AAAGCACTTTGAAAACGACACAGTTTTGGGAGATAAGTTTGAAGAAAATACAGCTGATGGCAGAAAAACTCAGACTGTCT
GCAACCTTACAGATGGCTCATTGGTTCAACATCAAGAATGGGATGGGAAAGAAAGCACGATAACAAGAAAAGTGACAGAT
GGGAAATTAGTGGTGGAATGCATCATGAACAATGTCACCTGTACTCGGGTCTATGAAAAAGTA

ORF - retro_ogar_843 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.55 %
Parental protein coverage: 97.76 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSNRFLGTWKLVSSERFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTEST-FKNTEISFKLGQE
S....G.W.LV.S..FD.YMK.LGVGLA.RK.G..AKP...I...G....I..EST.F.N......LG..
RetrocopySQQLAGRWRLVDSKGFDEYMKELGVGLALRKMGAMAKPHCVITCDGKNLAIKMEST<FENDTV---LGDK
ParentalFEETTADNRKTKSIVTLERGSLNQVQKWDGKETTIKRKLMNGKMVVECMMKGVVCTRIYEKV
FEE.TAD.RKT.....L..GSL.Q.Q.WDGKE.TI.RK...GK.VVEC.M..V.CTR.YEKV
RetrocopyFEENTADGRKTQTVCNLTDGSLVQHQEWDGKESTITRKVTDGKLVVECIMNNVTCTRVYEKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_843 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Latimeria chalumnae ENSLACG000000085113 retrocopies
Myotis lucifugus ENSMLUG000000095291 retrocopy
Otolemur garnettii ENSOGAG0000000241310 retrocopies
Otolemur garnettii ENSOGAG00000012166 1 retrocopy
retro_ogar_843 ,
Otolemur garnettii ENSOGAG000000137574 retrocopies
Otolemur garnettii ENSOGAG000000311101 retrocopy
Oryzias latipes ENSORLG000000082821 retrocopy



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