Parental gene:

ENSLACG00000008511

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH128667.1:348419..353072(-)


>ENSLACG00000008511
GGCATCATGGTCGATCAGTTCGTAGGAACGTGGAAACTGGAGACCAGTGACAATTTCGATGATTACATGAAAGCGTTGGG
GGTGGGTTTTGCCACCAGGACGCTCGGGAGTGTAACCAAGCCGAGCGTGGTTGTGTCTGTAGATGGGGATCGGATCACTA
TCAAGACGGAAAGCACCGTGAAAACCACCTCGGTCACATTTAAACTGGGAGAGGAATTCGATGAAACTACAGCGGACGAC
AGAAAAACGAAGACTGTGTTTAATCTGGAAAATGGTAAGCTAATTCAAGTACAGAAGTGGGATGGAAAAGAGACCATCAT
AGGAAGAGAACTGAAGGATGGCAAAATGATTACGGTATGTACCATGGGTGATGTTGTCTGCACAAGGACCTACATGAAGC
AATAA

Library Parental gene expression (RPM)
DRP000627_gill 0 .12 RPM
DRP000627_kidney 0 .04 RPM
DRP000627_pectoral_fin 0 .06 RPM
DRP000627_pelvic_fin 0 .11 RPM
DRP000627_pharynx 0 .06 RPM
DRP000627_tail_muscle 0 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013564 ortholog_many2many 1 retrogene
retro_acar_190,
Ailuropoda melanoleuca ENSAMEG00000014554 ortholog_many2many 1 retrogene
retro_amel_945,
Ailuropoda melanoleuca ENSAMEG00000014619 ortholog_many2many 1 retrogene
retro_amel_1139,
Bos taurus ENSBTAG00000047330 ortholog_many2many 3 retrogenes
retro_btau_1312, retro_btau_1828, retro_btau_886,
Canis familiaris ENSCAFG00000025410 ortholog_many2many 3 retrogenes
retro_cfam_132, retro_cfam_137, retro_cfam_228,
Callithrix jacchus ENSCJAG00000000433 ortholog_many2many 1 retrogene
retro_cjac_2486,
Callithrix jacchus ENSCJAG00000000444 ortholog_many2many 4 retrogenes
retro_cjac_1832, retro_cjac_2227, retro_cjac_2816, retro_cjac_4084,
Cavia porcellus ENSCPOG00000025732 ortholog_many2many 1 retrogene
retro_cpor_948,
Dasypus novemcinctus ENSDNOG00000018066 ortholog_many2many 5 retrogenes
retro_dnov_1073, retro_dnov_1231, retro_dnov_1318, retro_dnov_2392, retro_dnov_559,
Equus caballus ENSECAG00000008270 ortholog_many2many 2 retrogenes
retro_ecab_894, retro_ecab_938,
Equus caballus ENSECAG00000023552 ortholog_many2many 1 retrogene
retro_ecab_761,
Erinaceus europaeus ENSEEUG00000014023 ortholog_many2many 2 retrogenes
retro_eeur_405, retro_eeur_627,
Echinops telfairi ENSETEG00000007443 ortholog_many2many 14 retrogenes
retro_etel_1024, retro_etel_1241, retro_etel_1276, retro_etel_1405, retro_etel_1467, retro_etel_1706, retro_etel_1842, retro_etel_1904, retro_etel_2003, retro_etel_512, retro_etel_602, retro_etel_620, retro_etel_806, retro_etel_994,
Felis catus ENSFCAG00000006032 ortholog_many2many 2 retrogenes
retro_fcat_1243, retro_fcat_1834,
Homo sapiens ENSG00000164687 ortholog_many2many 12 retrogenes
retro_hsap_1205, retro_hsap_1279, retro_hsap_1520, retro_hsap_1521, retro_hsap_2167, retro_hsap_2568, retro_hsap_3000, retro_hsap_3357, retro_hsap_3376, retro_hsap_3811, retro_hsap_4717, retro_hsap_880,
Homo sapiens ENSG00000197416 ortholog_many2many 1 retrogene
retro_hsap_3679,
Gorilla gorilla ENSGGOG00000005964 ortholog_many2many 8 retrogenes
retro_ggor_1005, retro_ggor_1163, retro_ggor_2079, retro_ggor_2276, retro_ggor_2284, retro_ggor_2563, retro_ggor_2931, retro_ggor_940,
Gorilla gorilla ENSGGOG00000016835 ortholog_many2many 1 retrogene
retro_ggor_2488,
Macropus eugenii ENSMEUG00000002136 ortholog_many2many 1 retrogene
retro_meug_1874,
Microcebus murinus ENSMICG00000001311 ortholog_many2many 2 retrogenes
retro_mmur_137, retro_mmur_702,
Microcebus murinus ENSMICG00000005319 ortholog_many2many 1 retrogene
retro_mmur_1131,
Myotis lucifugus ENSMLUG00000009514 ortholog_many2many 3 retrogenes
retro_mluc_1590, retro_mluc_1920, retro_mluc_501,
Myotis lucifugus ENSMLUG00000009529 ortholog_many2many 1 retrogene
retro_mluc_1953,
Macaca mulatta ENSMMUG00000000486 ortholog_many2many 4 retrogenes
retro_mmul_1417, retro_mmul_1920, retro_mmul_2095, retro_mmul_2230,
Macaca mulatta ENSMMUG00000010906 ortholog_many2many 1 retrogene
retro_mmul_1311,
Macaca mulatta ENSMMUG00000019337 ortholog_many2many 1 retrogene
retro_mmul_1787,
Mus musculus ENSMUSG00000027533 ortholog_many2many 4 retrogenes
retro_mmus_1685, retro_mmus_1791, retro_mmus_2084, retro_mmus_3185,
Nomascus leucogenys ENSNLEG00000002515 ortholog_many2many 1 retrogene
retro_nleu_528,
Otolemur garnettii ENSOGAG00000002413 ortholog_many2many 10 retrogenes
retro_ogar_1024, retro_ogar_1151, retro_ogar_1286, retro_ogar_1676, retro_ogar_2873, retro_ogar_3066, retro_ogar_3099, retro_ogar_3265, retro_ogar_715, retro_ogar_878,
Otolemur garnettii ENSOGAG00000012166 ortholog_many2many 1 retrogene
retro_ogar_843,
Oryzias latipes ENSORLG00000008282 ortholog_many2many 1 retrogene
retro_olat_7,
Pongo abelii ENSPPYG00000018699 ortholog_many2many 1 retrogene
retro_pabe_27,
Pongo abelii ENSPPYG00000018703 ortholog_many2many 1 retrogene
retro_pabe_3016,
Pan troglodytes ENSPTRG00000020373 ortholog_many2many 12 retrogenes
retro_ptro_1029, retro_ptro_1030, retro_ptro_1498, retro_ptro_1654, retro_ptro_2029, retro_ptro_2131, retro_ptro_2265, retro_ptro_2295, retro_ptro_2664, retro_ptro_3135, retro_ptro_823, retro_ptro_875,
Pan troglodytes ENSPTRG00000022654 ortholog_many2many 1 retrogene
retro_ptro_2493,
Pteropus vampyrus ENSPVAG00000017850 ortholog_many2many 5 retrogenes
retro_pvam_1159, retro_pvam_467, retro_pvam_531, retro_pvam_852, retro_pvam_89,
Rattus norvegicus ENSRNOG00000049075 ortholog_many2many 3 retrogenes
retro_rnor_1762, retro_rnor_1879, retro_rnor_1997,
Sus scrofa ENSSSCG00000006153 ortholog_many2many 1 retrogene
retro_sscr_476,
Ictidomys tridecemlineatus ENSSTOG00000007877 ortholog_many2many 3 retrogenes
retro_itri_1305, retro_itri_389, retro_itri_72,
Tarsius syrichta ENSTSYG00000001472 ortholog_many2many 5 retrogenes
retro_tsyr_126, retro_tsyr_1534, retro_tsyr_1894, retro_tsyr_1982, retro_tsyr_2024,
Tursiops truncatus ENSTTRG00000005377 ortholog_many2many 1 retrogene
retro_ttru_1800,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_37 74.44 66.42
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2. retro_lcha_45 79.45 52.99
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3. retro_lcha_57 74.74 70.15
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Download FASTA sequences of all ENSLACG00000008511 retrocopies