RetrogeneDB ID: | retro_opri_368 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_10093:12253..12648(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF114 | ||
Ensembl ID: | ENSOPRG00000004732 | ||
Aliases: | None | ||
Description: | ring finger protein 114 [Source:HGNC Symbol;Acc:13094] |
Percent Identity: | 81.43 % |
Parental protein coverage: | 58.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MAAQQQ-DRGAPSQPAGP-AAETDPLSRFTCPVCLEVYDKPM-QVPCG-HVFCSACLQECLKPKKPVCGV |
MAAQQQ.DRGAPSQ.AGP..AETDPLS.FTCPVCLEVY.KP..QVPC..HV.CSA.LQECL...KPVCGV | |
Retrocopy | MAAQQQ>DRGAPSQQAGP<LAETDPLSCFTCPVCLEVYHKPI>QVPCD<HVLCSAYLQECL---KPVCGV |
Parental | CRNALAPGVPAA-ELERQIERTETSCHG-CRKNFFLSKIRAHVATCSKYQSYIMEGVKATTKDTSLQQRN |
C.NAL.PGVPA..ELERQI..TETSCHG.C.K.FFL.KIRAHVATCSKYQSYIMEGVKATTKDT.LQQRN | |
Retrocopy | CLNALDPGVPAG>ELERQI*NTETSCHG>CHKTFFLAKIRAHVATCSKYQSYIMEGVKATTKDTFLQQRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009113 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011155 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003953 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000004732 | 2 retrocopies |
retro_opri_368 , retro_opri_709,
|
Ochotona princeps | ENSOPRG00000011494 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004117 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001827 | 1 retrocopy |