RetrogeneDB ID: | retro_ogar_2158 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873597.1:9399853..9400541(+) | ||
Located in intron of: | ENSOGAG00000010239 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF114 | ||
Ensembl ID: | ENSOGAG00000003953 | ||
Aliases: | None | ||
Description: | ring finger protein 114 [Source:HGNC Symbol;Acc:13094] |
Percent Identity: | 83.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KMAAQQQELEGGAQRAGSAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRS |
KMAAQQQELEGG.Q.A...AEAD.LGRFTCPVCLEVY.KPVQVPC.H.FCSACLQECLK.KKPVCGVC.S | |
Retrocopy | KMAAQQQELEGGVQQARWVAEADSLGRFTCPVCLEVYKKPVQVPCRHIFCSACLQECLKLKKPVCGVCCS |
Parental | ALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDVSLQPRNVPNRY |
ALAPG..AVEL..QIESTETSC.GCR.....SKIRAHVATCSKYQNYIMEGVKATTKDVS.QPRNVP..Y | |
Retrocopy | ALAPGI*AVELKLQIESTETSCYGCR*XXXXSKIRAHVATCSKYQNYIMEGVKATTKDVSFQPRNVPSCY |
Parental | TFPCPYCPEKNFDQEGLVEHCKLSHSKDTKSVVCPICASMPWGD-PNYRSANFIEHIQRRHQFSYDTFVD |
TFPCPYCPEKNFDQEGLV..CKLSHSKDT.SVVCPICASMP.GD.PNY.S.NFIEHIQ..HQFSYDTFVD | |
Retrocopy | TFPCPYCPEKNFDQEGLVDNCKLSHSKDTRSVVCPICASMP*GD>PNYHSTNFIEHIQDQHQFSYDTFVD |
Parental | YDVDEEDMMNQVLQRSIIDQ |
YDVDEEDMM.QVLQ.SI..Q | |
Retrocopy | YDVDEEDMMHQVLQHSITGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009113 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011155 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003953 | 3 retrocopies |
retro_ogar_1149, retro_ogar_2158 , retro_ogar_2330,
|
Ochotona princeps | ENSOPRG00000004732 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004117 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001827 | 1 retrocopy |