RetrogeneDB ID: | retro_ogar_2330 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873612.1:2102471..2102858(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF114 | ||
Ensembl ID: | ENSOGAG00000003953 | ||
Aliases: | None | ||
Description: | ring finger protein 114 [Source:HGNC Symbol;Acc:13094] |
Percent Identity: | 72.09 % |
Parental protein coverage: | 56.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAVELERQIESTETS |
A.PLG.F.C.VCLEVY.K.V.VPCGH.FC.A.L.ECLKP.KPV.GV....LAP...AV.L....ESTE.S | |
Retrocopy | ATPLGPFMCLVCLEVYKKAVPVPCGHTFCCA*LWECLKPRKPVSGVYCFTLAPRL*AVDLKQRTESTEMS |
Parental | CHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDVSLQPRNVPNRYTFPCPYCPEK |
CHGC.KNFFLSKI.AHVAT..KYQNY.MEGVKATTKDVSL.PRNV.N.YTFPCPY..EK | |
Retrocopy | CHGCCKNFFLSKILAHVATYFKYQNYTMEGVKATTKDVSL*PRNVANCYTFPCPYRFEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009113 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011155 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003953 | 3 retrocopies |
retro_ogar_1149, retro_ogar_2158, retro_ogar_2330 ,
|
Ochotona princeps | ENSOPRG00000004732 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004117 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001827 | 1 retrocopy |