RetrogeneDB ID: retro_ogar_1149

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873537.1:17735162..17735563(+)
• Located in intron of: ENSOGAG00000006748

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF114
• Ensembl ID: ENSOGAG00000003953
• Aliases: None
• Description: ring finger protein 114 [Source:HGNC Symbol;Acc:13094]

Sequence

>retro_ogar_1149
TGCTCTGTGGACACGTCTTTTGCTCTGCAGCCGAAGAAATCTGTCTATGGGGTCTTGCCGCAGAGCTCTGGCACCTGGTG
TCTGAGCCATGGAGCTCGAGCTACATATCAAGACCACAAAGAATTCTTGTCATGGCTGCTATAAGAATTTCCTCTTATCC
AAGATCTGGGCCCATGTGGCTTCCTGTTCTAAATACCAGAATTACATCATGGAAGGTGTGAAGGCCACCACTAAGGATGT
GTCACTTCAGCCAAGGAATGTCGCAAATCATCATACCCTTCCTTGTCCTTACTGTCCTGAGAAGAATTTTAACCAGGGAG
GACTTGTGGTTACAACATTACAAACTATCCCACAGCAAGGACACCAAATGTATGGTTTGTTTGATATGTGTCTCGATGCC
C

Alignment

ORF - retro_ogar_1149 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.85 %
• Parental protein coverage: 57.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  CSACLQECLKPKKPVCGV-CRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYI
          CS......L.PKK.V.GV.CR.ALAPGV.A.ELE..I..T..SCHGC.KNF.LSKI.AHVA.CSKYQNYI
Retrocopy CSVDTSFALQPKKSVYGV>CRRALAPGV*AMELELHIKTTKNSCHGCYKNFLLSKIWAHVASCSKYQNYI

Parental  MEGVKATTKDVSLQPRNVPNRYTFPCPYCPEKNFDQ-EGL-VEHCKLSHSKDTKSVVCPICASMP
          MEGVKATTKDVSLQPRNV.N..T.PCPYCPEKNF.Q.E.L...H.KLSHSKDTK..VC.IC.SMP
Retrocopy MEGVKATTKDVSLQPRNVANHHTLPCPYCPEKNFNQ>EDLWLQHYKLSHSKDTKCMVCLICVSMP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1149 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000009113	2 retrocopies	retro_dnov_1534, retro_dnov_1557,
Microcebus murinus	ENSMICG00000011155	1 retrocopy	retro_mmur_992,
Otolemur garnettii	ENSOGAG00000003953	3 retrocopies	retro_ogar_1149 , retro_ogar_2158, retro_ogar_2330,
Ochotona princeps	ENSOPRG00000004732	2 retrocopies	retro_opri_368, retro_opri_709,
Pteropus vampyrus	ENSPVAG00000004117	4 retrocopies	retro_pvam_1136, retro_pvam_1148, retro_pvam_1149, retro_pvam_1477,
Sarcophilus harrisii	ENSSHAG00000001827	1 retrocopy	retro_shar_193,