RetrogeneDB ID: | retro_opri_499 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_1410:286231..287196(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CTSV | ||
Ensembl ID: | ENSOPRG00000001030 | ||
Aliases: | None | ||
Description: | cathepsin V [Source:HGNC Symbol;Acc:2538] |
Percent Identity: | 84.88 % |
Parental protein coverage: | 96.99 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKPLFLLAAVCWGIAFAIPTFDQ-IDTQWYQGKATHXXXXXXNEEGWRRAVWEKNKKMIDLHNGEYSQ-G |
M.PLFLL.A.CWGIAFAIP.FDQ..DTQWYQ.KATH......NEEGWRRAVWEKNK.M.DLHNGEYSQ.G | |
Retrocopy | MNPLFLLVALCWGIAFAIPNFDQNLDTQWYQWKATHKRLYDLNEEGWRRAVWEKNK-MTDLHNGEYSQ<G |
Parental | KHGFTMAMNAYGDMTNEEFRQVMNGYQNQRHRQGKMFHEPLLLQTPKSVDWREKGYVTPVKNQGQCGSCW |
K.GFTMAMN.YG.MTNEEFRQVMNG.Q.Q...QGKM.HEPLLLQT..SVD.REKGYVTPVKNQGQCG.CW | |
Retrocopy | KYGFTMAMNVYGGMTNEEFRQVMNG*QHQKPMQGKMVHEPLLLQTSTSVD*REKGYVTPVKNQGQCGPCW |
Parental | AFSATGALEGQMFRKTGKLVSLSEQNLVDCSKSQGNMGCNGGLMDNAFEYVKENGGLDSEESYPYEAVDE |
AFSAT..LEGQMF.KTGKL.S.SE.N.VDCSKSQGNMGCNGGL.DN.FEYVKENGGLDSEESYPY.AVDE | |
Retrocopy | AFSATDILEGQMFQKTGKLESPSE*NPVDCSKSQGNMGCNGGLIDNVFEYVKENGGLDSEESYPYQAVDE |
Parental | TCKYRPECSAANDTGFVDIQQHEKALLKAVATVGPISAAIDAGHPSFQFYKSGIYYDKECSSKELDHGIL |
.CKYRPECSAANDTGFVDI.QHEKALLKAVATVGPISAAI.AG.PSFQFY.SGIYYDKECSSKELDH..L | |
Retrocopy | MCKYRPECSAANDTGFVDILQHEKALLKAVATVGPISAAINAGYPSFQFYRSGIYYDKECSSKELDHSVL |
Parental | VVGYGFEGTHPNITKYWLVKNSWGPEWGIDGYVKMIRDKDNHCG |
VV.YGFEGTHPNITKYWLVKNSWGPEW.IDGYVKMIRDKDNH.G | |
Retrocopy | VVAYGFEGTHPNITKYWLVKNSWGPEWSIDGYVKMIRDKDNH*G |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies |
retro_opri_186, retro_opri_499 ,
|
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy |