RetrogeneDB ID: | retro_chof_424 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_1070:26562..27433(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000007548 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.19 % |
Parental protein coverage: | 92.68 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | SSSEEDWRRAVWEKNMK-IIEVHNQEYSLGQHSFKLGMNAFGDMTSEEFRQVMNGFQNKEHKKGEMFSES |
S..EE.WRRAV.E.NMK..IE.HN.EYSL.QH.F...MNAF.DMT.EEFR.VMNGFQN.EHKKG.MF.E. | |
Retrocopy | SMNEEGWRRAV*ENNMK<MIELHNLEYSLWQHPFTIEMNAFVDMTNEEFREVMNGFQNQEHKKGKMFYEV |
Parental | PSEVPTSVDWRDKGYVTPVKNQGHCGSCWAFSAAGSLEGQMFRKTGILVSLSEQNLVDCSRAEGNSGCNG |
PSE.P.SVDW..KGY.TP.K.Q.H.GS.WAFS...S.EGQM..KTG...SLSEQNLVD.....G..GCNG | |
Retrocopy | PSEIPKSVDWCKKGYMTPLKDQVH*GS*WAFSTISSHEGQMSQKTGKFFSLSEQNLVDSTQVAGDNGCNG |
Parental | GLMDNAFQYVQDNKGLDSEESYPYVGKDMNCSYKPEYSAANDTGFVEVAPLEKTLMAAVAAVGPISVAID |
GLMDNAFQYVQDNK.L..E.SYPY.GKDM...YK.EYSAANDTGFV...P..K..M.AVA.VGP.SVAID | |
Retrocopy | GLMDNAFQYVQDNKSLNLEKSYPYIGKDMT*CYKTEYSAANDTGFVDIPPR*KAPMKAVATVGPTSVAID |
Parental | ASHESFQFYESGI-YYEPDCSSKDLDHGVLVVGYGFEETDSDNNKYWLVKNSWGESWGMEGYVKMARDRD |
..H.SFQF..S...Y.E..CSSKDLDHGVL.V.YGF...D.D..K....K.SW.E.WG.EG..K.AR... | |
Retrocopy | VHHDSFQFCSSAL<YFELGCSSKDLDHGVLLVNYGFGGADLDYSKCCRIKDSWSENWGVEGDIKIAREWN |
Parental | NHCGIATKASYPT |
NHCG.A..ASYPT | |
Retrocopy | NHCGVAASASYPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies |
retro_chof_1227, retro_chof_1332, retro_chof_1345, retro_chof_141, retro_chof_1464, retro_chof_2392, retro_chof_383, retro_chof_424 ,
|
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy |