RetrogeneDB ID: | retro_dnov_2387 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_69916:3..538(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000012118 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000012037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.72 % |
Parental protein coverage: | 53.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QQWKATHQRLYGMNEEGWRRAVWEKN-MKRIERHNLAYNLGQQSFTMGMNAFGDMTNEEFRQVMNGYQKQ |
Q.WKA.HQRLY....E.WRRAVWEKN..KRI....L.Y..GQ.SFTMGM.AF.DM.NEEFRQVMNG.Q.Q | |
Retrocopy | QEWKAMHQRLYSIDGEVWRRAVWEKN<LKRIDQYYLGYSQGQRSFTMGMKAF*DMANEEFRQVMNGFQNQ |
Parental | LNRKGKVFFDFLSEVPKSVDWREKGYVTPVKNQGECGSCWAFSAVGALEGQMFRKTGKLISLSEQNLVDC |
LNRK...F.DF.SEV.KSVDWREKGY.TPVKNQG.C.SCW.FSAVG.L..Q.F.KTG.L.SLSEQNLVDC | |
Retrocopy | LNRKEEIFYDFPSEVLKSVDWREKGYMTPVKNQGQCDSCWVFSAVGSLK*QVFQKTGRLVSLSEQNLVDC |
Parental | SQAEG-NHGCNGGLMDNAFQYVQDNRGLDSEDSYPYVGRDM |
SQAEG...GC..G.MDNAF..V.DN.GLD.E.SYPY.GR.M | |
Retrocopy | SQAEG<QNGCKSGFMDNAFR*VKDNKGLDLEESYPYTGRAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 31 .50 RPM |
SRP012922_cerebellum | 0 .00 RPM | 16 .22 RPM |
SRP012922_heart | 0 .00 RPM | 84 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 921 .05 RPM |
SRP012922_liver | 0 .00 RPM | 457 .14 RPM |
SRP012922_lung | 0 .00 RPM | 159 .90 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 58 .85 RPM |
SRP012922_spleen | 0 .00 RPM | 97 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy |
retro_dnov_2387 ,
|
Dasypus novemcinctus | ENSDNOG00000012612 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy |