RetrogeneDB ID: | retro_chof_2392 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_70993:7795..8655(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000007548 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.09 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SEEDWRRAVWEKNMKIIEVHNQEYSLG-QHSFKLGMNAFGDMTSEEFRQVMNGFQNKEHKKGEMFSESPS |
.EE.WRRAVWEKN.K.IE.HN.EYSLG.Q.S.K..MNAFGDMT.EEF.QVMNGFQN.EHK.G.MF...PS | |
Retrocopy | NEEGWRRAVWEKNLKMIELHNLEYSLG<QYSLKTRMNAFGDMTNEEFKQVMNGFQNQEHKEGKMFYKLPS |
Parental | EVPTSVDWRDKGYVTPVKNQGHCGSCWAFSAAGSLEGQMFRKTGILVSLSEQNLVDCSRAEGNSGCNGGL |
EV..SVDW..K.Y..PVKNQ..CGSCWAFSA.GSLEGQ.F.KTG.LVSL.EQNL.DCS.AEGN..CNGGL | |
Retrocopy | EVHKSVDWHKKDYMSPVKNQHQCGSCWAFSAIGSLEGQIFQKTGKLVSLGEQNLADCSQAEGNNSCNGGL |
Parental | MDNAFQYVQDNKGLDSEESYPYVGKDMNCSYKPEYSAANDTGFVEVAPLEKTLMAAVAAVGPISVAIDAS |
MDNAFQYVQDNKGLDS..SYPY.GK.M.C.YKP.YSA.NDTGFV...P.EK.LM.AVA..GPISVAIDAS | |
Retrocopy | MDNAFQYVQDNKGLDSQKSYPYIGKYMTCCYKPKYSAVNDTGFVDIPPWEKALMKAVATIGPISVAIDAS |
Parental | HESFQFYESGIYYEPDCSSKDLDHGVLVVGYGFEETDSDNNKYWLVKNSWGESWGMEGYVKMARDRDNHC |
..SF.FY.SGI.Y.PD.SSKDLDHGVLVV..GFEETDSDNNKYWLV.NSWGE.WGMEG..KMARD....C | |
Retrocopy | YDSFKFYSSGI-Y*PDGSSKDLDHGVLVVNCGFEETDSDNNKYWLVRNSWGEDWGMEGKIKMARDQNDRC |
Parental | GIATKASYP |
G.AT.ASYP | |
Retrocopy | GVATSASYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies |
retro_chof_1227, retro_chof_1332, retro_chof_1345, retro_chof_141, retro_chof_1464, retro_chof_2392 , retro_chof_383, retro_chof_424,
|
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy |