RetrogeneDB ID: | retro_pabe_2868 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:53810238..53810599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPA3 | ||
Ensembl ID: | ENSPPYG00000017787 | ||
Aliases: | None | ||
Description: | replication protein A3, 14kDa [Source:HGNC Symbol;Acc:10291] |
Percent Identity: | 79.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVDMMEFPRSRINAGML-AQFIDKPVCFVGKLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEV |
M.D.ME.PRSRIN..ML...FI..P.CF.G.LEK..PTGKMFILSD.EGKNG.IELMEPL.EEISGI..V | |
Retrocopy | MLDVMELPRSRINTSML<TWFIHQPICFTGRLEKTPPTGKMFILSDEEGKNGIIELMEPLHEEISGILKV |
Parental | -VGRVTAKATILCTSYVQFKEDNHPFDLGLYNEAVKIIHEFPQFYPLGIVQHD |
.VGRVT.KATI.C.SYVQFKEDNHPFDLGLYNEAVKIIHEFPQFYPLGIVQ.D | |
Retrocopy | <VGRVTSKATIMCASYVQFKEDNHPFDLGLYNEAVKIIHEFPQFYPLGIVQYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .05 RPM |
SRP007412_heart | 0 .00 RPM | 8 .22 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .23 RPM |
SRP007412_liver | 0 .03 RPM | 9 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3473 |
Pan troglodytes | retro_ptro_2354 |
Gorilla gorilla | retro_ggor_2342 |