RetrogeneDB ID: | retro_pabe_2879 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:71189852..71190312(+) | ||
Located in intron of: | ENSPPYG00000016763 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAB1 | ||
Ensembl ID: | ENSPPYG00000007192 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694] |
Percent Identity: | 64.97 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LSAYVRRLPAAFAPLPRVR-MLAVARPLSTALCSAGTQTRLGPL----QPASVLAQVPGR-VTQLCRQYS |
..A.V..LP.A....PRV..MLA.A...S..L...G.....G.L....Q.A.VL..V.GR.VTQLC.QYS | |
Retrocopy | MAACVCHLPLAITLMPRVP<MLATAC-CSASLVLCGDSDEAGALQLAPQRALVLVHVLGR>VTQLCCQYS |
Parental | DMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVE-IIMAMEDEFGFEIPDIDAEKL |
DMPPLTLEGI.D..LY.LK..DKIDPEKLSVNS.FMKDL..DSLDQVE...M.MED.FGFEIPDID.EKL | |
Retrocopy | DMPPLTLEGIKDCLLYILKPCDKIDPEKLSVNSYFMKDLCFDSLDQVE>VRMVMEDKFGFEIPDIDVEKL |
Parental | MCPQEIVDYIADKKDVY |
.CPQEIVDYIADK.DVY | |
Retrocopy | ICPQEIVDYIADKRDVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 23 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .02 RPM |
SRP007412_heart | 0 .00 RPM | 44 .88 RPM |
SRP007412_kidney | 0 .07 RPM | 28 .61 RPM |
SRP007412_liver | 0 .00 RPM | 20 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3484 |
Pan troglodytes | retro_ptro_2358 |
Gorilla gorilla | retro_ggor_2349 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014304 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017667 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020616 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012038 | 2 retrocopies | |
Felis catus | ENSFCAG00000013241 | 3 retrocopies | |
Homo sapiens | ENSG00000004779 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006320 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012681 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000007778 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020522 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016352 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030869 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000005562 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007192 | 1 retrocopy |
retro_pabe_2879 ,
|
Pan troglodytes | ENSPTRG00000007889 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018129 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024657 | 2 retrocopies |