RetrogeneDB ID: | retro_cfam_1738 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:48387400..48387746(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000017667 | ||
Aliases: | None | ||
Description: | Acyl carrier protein [Source:UniProtKB/TrEMBL;Acc:E2RJ92] |
Percent Identity: | 53.78 % |
Parental protein coverage: | 75.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PAGARTRPGARQAAPVLAQVPGTQLCRQYSDAPPLTLE-GIKDRVLY-VLKLYDKIDPEKLSVNSHFMKD |
P.....R.G...AA...A............DA.PLTLE.G.....LY..LKL......E.L.VN..FMKD | |
Retrocopy | PMPHKARGGLGSAACLRAHAGSRRRDIWHTDAIPLTLE<GNQLHILY<LLKLVARWTQENL-VNFYFMKD |
Parental | LGLDSLDQVEIIMAMEDEFGFEIPDTDAEKLMCPQEIVDYIADKKDVYE |
.GLD..DQV.IIMA.EDEFGFEIPD..AEKLMCP.EIVDY.AD.KD..E | |
Retrocopy | VGLDTWDQVDIIMAREDEFGFEIPDGEAEKLMCP*EIVDYTADTKDAHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .92 RPM |
SRP017611_brain | 0 .00 RPM | 26 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .22 RPM |
SRP017611_liver | 0 .00 RPM | 13 .12 RPM |