RetrogeneDB ID: | retro_hsap_3484 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:71444337..71444663(+) | ||
Located in intron of: | ENSG00000112305 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000217767 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAB1 | ||
Ensembl ID: | ENSG00000004779 | ||
Aliases: | NDUFAB1, ACP, FASN2A, SDAP | ||
Description: | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694] |
Percent Identity: | 76.36 % |
Parental protein coverage: | 69.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QPALVLAQVPGR-VTQLCRQYSDMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVE |
Q.ALVLA.V.GR.VTQ.C.QYSD.PPL.LEGI.D..LY.LK..D.IDPEKLSVNS.FMKDL.LDSLDQVE | |
Retrocopy | QRALVLAHVLGR>VTQSCCQYSDLPPLMLEGIEDCLLYILKPCDRIDPEKLSVNSYFMKDLCLDSLDQVE |
Parental | -IIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE |
...M.MED.FGFEIP.ID.EKL.CPQEIVDYIADK.DVYE | |
Retrocopy | >VSMVMEDKFGFEIPGIDMEKLICPQEIVDYIADKRDVYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 18 .21 RPM |
bodymap2_adrenal | 0 .04 RPM | 32 .85 RPM |
bodymap2_brain | 0 .02 RPM | 43 .86 RPM |
bodymap2_breast | 0 .00 RPM | 43 .62 RPM |
bodymap2_colon | 0 .02 RPM | 44 .16 RPM |
bodymap2_heart | 0 .00 RPM | 138 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 47 .77 RPM |
bodymap2_liver | 0 .00 RPM | 42 .78 RPM |
bodymap2_lung | 0 .00 RPM | 25 .18 RPM |
bodymap2_lymph_node | 0 .00 RPM | 27 .54 RPM |
bodymap2_ovary | 0 .13 RPM | 27 .41 RPM |
bodymap2_prostate | 0 .07 RPM | 40 .91 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 35 .50 RPM |
bodymap2_testis | 0 .00 RPM | 37 .08 RPM |
bodymap2_thyroid | 0 .00 RPM | 33 .50 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2358 |
Gorilla gorilla | retro_ggor_2349 |
Pongo abelii | retro_pabe_2879 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014304 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017667 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020616 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012038 | 2 retrocopies | |
Felis catus | ENSFCAG00000013241 | 3 retrocopies | |
Homo sapiens | ENSG00000004779 | 1 retrocopy |
retro_hsap_3484 ,
|
Gorilla gorilla | ENSGGOG00000006320 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012681 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000007778 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020522 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016352 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030869 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000005562 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007192 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007889 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018129 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024657 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |