RetrogeneDB ID: | retro_pabe_315 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:164403934..164405172(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC2A3 | ||
Ensembl ID: | ENSPPYG00000004235 | ||
Aliases: | SLC2A3, GLUT3 | ||
Description: | solute carrier family 2, facilitated glucose transporter member 3 [Source:RefSeq peptide;Acc:NP_001127589] |
Percent Identity: | 85.51 % |
Parental protein coverage: | 97.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTALRGA |
FVN.F.RRNSML.VNLLAVTGGC..GLCKVA..VE.LIL..L.IGLFC.LCTGFVP.YIGEISP.AL.G. | |
Retrocopy | FVNSFDRRNSMLTVNLLAVTGGCLVGLCKVAELVEILILAYLVIGLFCRLCTGFVPTYIGEISPVALQGV |
Parental | FGTLNQLGIVVGILVAQIFGLEFILGSEELWPLLLGFTILPTILQSAALPFCPESPRFLLINRKEEENAK |
FGTLNQLGIVVGILVAQIF.LEFILGSE.LWP.LLGF.I.P..LQSAALPFCPESPRFLLINRKEEENAK | |
Retrocopy | FGTLNQLGIVVGILVAQIFDLEFILGSEDLWPVLLGFPISPAMLQSAALPFCPESPRFLLINRKEEENAK |
Parental | QILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYST |
.ILQ.LWGTQ.VSQDIQEMKDESARM.QEKQVTVLELFRVSSY.QPIIISI.LQLSQQLSGINAVF.YST | |
Retrocopy | EILQWLWGTQNVSQDIQEMKDESARMAQEKQVTVLELFRVSSYQQPIIISIMLQLSQQLSGINAVFCYST |
Parental | GIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMS |
GIFK.AGVQEPI..TIGAGVVNTIFT.VSLFLVERA.RRTLHMIGLGGM.FCS.LMTV.LLLK...NG.S | |
Retrocopy | GIFKGAGVQEPICVTIGAGVVNTIFTIVSLFLVERAVRRTLHMIGLGGMTFCSILMTVCLLLKAECNGIS |
Parental | FVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLGAYVFI |
FVCIGAILVFV.FFEIGPGPIPWFIVAELFSQGP.PA.MAVAGCSNWTSNFLV.LLFPSAA..LGAYVFI | |
Retrocopy | FVCIGAILVFVVFFEIGPGPIPWFIVAELFSQGPGPAVMAVAGCSNWTSNFLVRLLFPSAAYHLGAYVFI |
Parental | IFTGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHGADRSG-KDGVMEMNSIEPAKETTTNV |
IFT.FLITF..FTFFKVPE...RTFEDIT.AFEGQAH.A.RSG.KD.VMEMNSI.PAKETTTNV | |
Retrocopy | IFTDFLITFSIFTFFKVPEMCYRTFEDITQAFEGQAHDANRSG<KDRVMEMNSIQPAKETTTNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 116 .72 RPM |
SRP007412_cerebellum | 0 .00 RPM | 103 .73 RPM |
SRP007412_heart | 0 .06 RPM | 47 .62 RPM |
SRP007412_kidney | 0 .07 RPM | 36 .76 RPM |
SRP007412_liver | 0 .09 RPM | 113 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_401 |
Pan troglodytes | retro_ptro_307 |
Gorilla gorilla | retro_ggor_398 |
Macaca mulatta | retro_mmul_502 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004556 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018988 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003074 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009834 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011295 | 1 retrocopy | |
Felis catus | ENSFCAG00000001625 | 1 retrocopy | |
Homo sapiens | ENSG00000059804 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016813 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000439 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026903 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008575 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004235 | 1 retrocopy |
retro_pabe_315 ,
|
Pan troglodytes | ENSPTRG00000004626 | 1 retrocopy |