RetrogeneDB ID: | retro_btau_709 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:61931164..61932610(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000030416 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC2A3 | ||
Ensembl ID: | ENSBTAG00000004556 | ||
Aliases: | None | ||
Description: | solute carrier family 2, facilitated glucose transporter member 3 [Source:RefSeq peptide;Acc:NP_777028] |
Percent Identity: | 88.38 % |
Parental protein coverage: | 97.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGTTKVTAPLIFAISVATIGSFQFGYNTGVINAPEAIIKDFLNYTLEERSEPPPSSVLLTSLWSLSVAIF |
MGT.KVTAPLIF.ISVATIGSFQFGYNTGVINAPE.IIKDFLNY.LE..S..PPSS.LLT.LWSLSVAIF | |
Retrocopy | MGTAKVTAPLIFTISVATIGSFQFGYNTGVINAPEEIIKDFLNYALEKWSGTPPSSMLLTFLWSLSVAIF |
Parental | SVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPM |
SVGGMIGSFS.GLFVNRFGRRNSM.IVNLLAIAGGCLMGFCK.AESVEMLI.GRL.IGLFCGLCTGFVPM | |
Retrocopy | SVGGMIGSFSIGLFVNRFGRRNSMFIVNLLAIAGGCLMGFCKMAESVEMLIVGRLVIGLFCGLCTGFVPM |
Parental | YIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVILGTEDLWPLLLGFTILPAIIQCAALPFCPESPR |
YI.EISPTALRGAFGTLNQLGIVIGILVAQIFGLKVILGT..LWPLLL.FTI.PAIIQCAALPFCPESPR | |
Retrocopy | YIEEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVILGTKELWPLLLVFTIIPAIIQCAALPFCPESPR |
Parental | FLLINRKEEEKAKEILQRLWGTEDVAQDIQEMKDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQ |
FLLINRK.EEKAKE.L.RLWGTEDVAQDIQEMKDES.RMS.EKQVTV.ELFRAPNYR.PII.SIMLQLSQ | |
Retrocopy | FLLINRKQEEKAKEVLRRLWGTEDVAQDIQEMKDESVRMSREKQVTVPELFRAPNYRKPIIVSIMLQLSQ |
Parental | QLSGINAVFYYSTGIFKDAGVQEPVYATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMT |
QLSGINAV.YYSTGIFKDAGVQEPVYAT.G.GVVNTIFTV.S.FLVERAGRRTLHLIGLGGMAFCSI... | |
Retrocopy | QLSGINAVIYYSTGIFKDAGVQEPVYATVGTGVVNTIFTVLSLFLVERAGRRTLHLIGLGGMAFCSIFIM |
Parental | ISLLLKDNYSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLF |
ISLLLK..YS.M..ICIGAILVF.AFFEIGPGPIPWFIVAELF.QGPRPAAMAVAGCSNWTSNFLVGL.F | |
Retrocopy | ISLLLKNDYSLMNCICIGAILVFIAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLTF |
Parental | PSAAFYLGAYVFIVFTVFLVIFWVFTFFKVPETRGRTFEEITRAFEGQTQTGTRGEKGPIME |
P.A.FYLGA.VFI.FT.FL.IFWVFTFFKVPETRGRTFEEIT..FEG..QTGT.GEKG.IME | |
Retrocopy | PLASFYLGAHVFIFFTIFLIIFWVFTFFKVPETRGRTFEEITQVFEG*VQTGTHGEKGSIME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 4 .47 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .34 RPM |
SRP017611_brain | 0 .00 RPM | 56 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .11 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .11 RPM | 627 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004556 | 2 retrocopies |
retro_btau_708, retro_btau_709 ,
|
Callithrix jacchus | ENSCJAG00000018988 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003074 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009834 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011295 | 1 retrocopy | |
Felis catus | ENSFCAG00000001625 | 1 retrocopy | |
Homo sapiens | ENSG00000059804 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016813 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000439 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026903 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008575 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004235 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004626 | 1 retrocopy |