RetrogeneDB ID: | retro_nleu_1572 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397299.1:20683698..20685178(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSNLEG00000026903 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.89 % |
Parental protein coverage: | 99.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GTQKVTPALIFAITIATIGCFQFGYNIGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFS |
GTQKVTP.LIFAITIATIG.FQFGYN.GVINAPE.I..EFIN.TL.DK.N.PPSE.L..SLW.LSVAIFS | |
Retrocopy | GTQKVTPSLIFAITIATIGSFQFGYNTGVINAPETIVREFIN-TLKDKANTPPSEMLRLSLWYLSVAIFS |
Parental | VGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCT-GFVPL |
.G.MIGSFSVGLFVN.F.RR.SML.VNLLAVTGGC.MGLCKVA..VEMLIL..LVIG.FC.LCT..FVP. | |
Retrocopy | IGCMIGSFSVGLFVNSFDRRKSMLTVNLLAVTGGCLMGLCKVAELVEMLILAYLVIGFFCRLCT<SFVPT |
Parental | YIGELSPTALQGAFGTLNQLGIVVGILVAQIFGLKFILGSEELWPLLLGFTIIPTILQSVALPFCPESPR |
YIGE.SP.AL.G.FGTLNQLGIVVGILVAQIF.L.FILGSE.LWP.LLGF.I....LQS.ALPFCPESPR | |
Retrocopy | YIGEISPIALRGVFGTLNQLGIVVGILVAQIFDLEFILGSEDLWPVLLGFPISSAMLQSAALPFCPESPR |
Parental | FLLINRKEEENAKRILQRLWGTQDVSQDIQEMKDESARMSQEKQVTLLELFRVSSYRQPLIISIVLQLSQ |
.LLINRKE.ENAK.ILQ.LW..QDVSQDIQEMKD.SARM.QEKQVT.LELFRVSSYRQP.IISI..QLSQ | |
Retrocopy | VLLINRKEKENAKEILQCLWSSQDVSQDIQEMKDGSARMAQEKQVTVLELFRVSSYRQPIIISIMFQLSQ |
Parental | QLSGINAVFYYSRGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMT |
QLSGINAVFYYS.GIFK.AGVQEPI..TI.AGVVN.IFT.VSLFLVERA.RRTLHMIGLGGMAFCS.LMT | |
Retrocopy | QLSGINAVFYYSTGIFKGAGVQEPICVTISAGVVNSIFTIVSLFLVERAVRRTLHMIGLGGMAFCSILMT |
Parental | VSLLLKDNYNGMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSHGPRPAAMAVASCSNWTSNFLVGLLF |
V.LLL.D..NG.SFVCIGAILVFV.FFEIGPGPIPWFIVAELFS.GP.PA...VA.CSNWTSNFLV.LLF | |
Retrocopy | VCLLLMDECNGISFVCIGAILVFVVFFEIGPGPIPWFIVAELFSQGPGPAVTTVAGCSNWTSNFLVRLLF |
Parental | PSAAHYLGAYVFMIFTGFLITFLAFTFFKVPETRGRTFEDITRAFEGQAHSANRSG-KDGVMEMNSIKPA |
PSA..YLGAY.F.IFT.FLITFL.FTFFKVP....RTFEDIT.AFEGQAH.A.RSG.KD.VMEMNSI.PA | |
Retrocopy | PSATYYLGAYIFIIFTDFLITFLIFTFFKVPDMCYRTFEDITQAFEGQAHDADRSG<KDHVMEMNSIQPA |
Parental | KETITNV |
KET.TNV | |
Retrocopy | KETTTNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004556 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018988 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003074 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009834 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011295 | 1 retrocopy | |
Felis catus | ENSFCAG00000001625 | 1 retrocopy | |
Homo sapiens | ENSG00000059804 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016813 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000439 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026903 | 2 retrocopies |
retro_nleu_1572 , retro_nleu_1904,
|
Oryctolagus cuniculus | ENSOCUG00000008575 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004235 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004626 | 1 retrocopy |