RetrogeneDB ID: | retro_pabe_3347 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:79290321..79290941(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL9 | ||
Ensembl ID: | ENSPPYG00000000857 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L9 [Source:HGNC Symbol;Acc:14277] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 77.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | WKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLA |
WKVPL..EG.K.RLH.RH...KLVEDTKH.PKENLE.I.TQSVE..GVRGDL.SVKKS..RN.LLPQ.LA | |
Retrocopy | WKVPLVSEGQKLRLHKRHYIDKLVEDTKHWPKENLEIIFTQSVETLGVRGDLASVKKSMDRNQLLPQRLA |
Parental | VYASPENRKLFEEEKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKNNVKWELNPEIVARHFFKNLGV |
.YASPEN.KLFEEEKLLR..GK.EKIQTKAGEATV.FLKSC.LEVGMKNNVKWELNPE.VARHFFKNLGV | |
Retrocopy | AYASPENKKLFEEEKLLRPGGKSEKIQTKAGEATVTFLKSCHLEVGMKNNVKWELNPETVARHFFKNLGV |
Parental | VVAPHTLKLPEEPITRWGEYWCEVTVNGLDTVRVPMSVVNFEKPK-TKRYKYWLAQQAAKAMAPTSPQ |
VV.PHTLKLPEEP.TR.G.Y.CEV.VNGL.TVRVPMS.VNFE.PK.T...KYWLAQQAA..MAP..P. | |
Retrocopy | VVTPHTLKLPEEPLTR*GKYCCEVMVNGLGTVRVPMSLVNFERPK<TQK*KYWLAQQAANGMAPPAPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 42 .41 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .48 RPM |
SRP007412_heart | 0 .00 RPM | 18 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 41 .76 RPM |
SRP007412_liver | 0 .00 RPM | 32 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4078 |
Pan troglodytes | retro_ptro_2765 |
Gorilla gorilla | retro_ggor_2735 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000258 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011403 | 1 retrocopy | |
Homo sapiens | ENSG00000143436 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001902 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006271 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010275 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001383 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030456 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000857 | 1 retrocopy |
retro_pabe_3347 ,
|
Pan troglodytes | ENSPTRG00000001295 | 2 retrocopies |