RetrogeneDB ID: | retro_hsap_4078 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:77515479..77516087(-) | ||
Located in intron of: | ENSG00000253661 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254305 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL9 | ||
Ensembl ID: | ENSG00000143436 | ||
Aliases: | MRPL9, L9mt | ||
Description: | mitochondrial ribosomal protein L9 [Source:HGNC Symbol;Acc:14277] |
Percent Identity: | 78.43 % |
Parental protein coverage: | 76.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | WKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLA |
WKVPLA.EG.K.RLH.RH...KLVEDT.H.PKENLE.I.TQSVE..GV.GDL.SVKKS..RN.LL.Q.LA | |
Retrocopy | WKVPLAREGQKLRLHQRHYIDKLVEDTEHWPKENLEIIFTQSVETLGVWGDLISVKKSVDRNQLLSQRLA |
Parental | VYASPENKKLFEEEKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKNNVKWELNPEIVARHFFKNLGV |
.YASPENKKLFEEEKLLR..GKL.KIQTKAGEATV.FLKSC.LEVGMKN.VK.ELNPE.VA.HFFKNLG. | |
Retrocopy | AYASPENKKLFEEEKLLRPGGKLQKIQTKAGEATVTFLKSCHLEVGMKNSVKRELNPETVACHFFKNLGG |
Parental | VVA-PHTLKLPEEPITRWGEYWCEVTVNGLDTVRVPMSVVNFEKPKTKRYKYWLAQQAAKAMAP |
VV..PH..KLPEEP.TRWG.Y.CEVTVNGL.TVRVPMS.VNFE.PK.KR.KYWLAQQAAK.MAP | |
Retrocopy | VVT<PHIIKLPEEPLTRWGKYCCEVTVNGLGTVRVPMSLVNFERPKIKR*KYWLAQQAAKGMAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 28 .17 RPM |
bodymap2_adrenal | 0 .00 RPM | 45 .46 RPM |
bodymap2_brain | 0 .02 RPM | 22 .50 RPM |
bodymap2_breast | 0 .00 RPM | 26 .38 RPM |
bodymap2_colon | 0 .08 RPM | 31 .67 RPM |
bodymap2_heart | 0 .00 RPM | 10 .95 RPM |
bodymap2_kidney | 0 .00 RPM | 25 .75 RPM |
bodymap2_liver | 0 .00 RPM | 14 .38 RPM |
bodymap2_lung | 0 .00 RPM | 14 .72 RPM |
bodymap2_lymph_node | 0 .00 RPM | 22 .73 RPM |
bodymap2_ovary | 0 .00 RPM | 39 .71 RPM |
bodymap2_prostate | 0 .00 RPM | 30 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 23 .41 RPM |
bodymap2_testis | 0 .00 RPM | 34 .24 RPM |
bodymap2_thyroid | 0 .04 RPM | 45 .95 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 18 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2765 |
Gorilla gorilla | retro_ggor_2735 |
Pongo abelii | retro_pabe_3347 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000258 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011403 | 1 retrocopy | |
Homo sapiens | ENSG00000143436 | 1 retrocopy |
retro_hsap_4078 ,
|
Gorilla gorilla | ENSGGOG00000001902 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006271 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010275 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001383 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030456 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000857 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001295 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |