RetrogeneDB ID: | retro_pabe_812 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:7114066..7114342(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DSTN | ||
Ensembl ID: | ENSPPYG00000010727 | ||
Aliases: | None | ||
Description: | destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750] |
Percent Identity: | 82.98 % |
Parental protein coverage: | 56.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGI |
VTI..PFKHFVG.LPEKDCRYALYDASFETKESR......FLWA.ELAPLKSKMIY.SSKDAIKKKFQGI | |
Retrocopy | VTIAEPFKHFVGILPEKDCRYALYDASFETKESRRIDV--FLWASELAPLKSKMIYTSSKDAIKKKFQGI |
Parental | KHECQANGPEDLNRACIAEKLGGS |
KHE...N.PEDL.RACIAEKLGGS | |
Retrocopy | KHEWETNRPEDLSRACIAEKLGGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .33 RPM |
SRP007412_cerebellum | 0 .12 RPM | 45 .48 RPM |
SRP007412_heart | 0 .00 RPM | 35 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 58 .93 RPM |
SRP007412_liver | 0 .00 RPM | 28 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_952 |
Pan troglodytes | retro_ptro_659 |
Macaca mulatta | retro_mmul_782 |