RetrogeneDB ID:

retro_pabe_812

Retrocopy
location
Organism:Orangutan (Pongo abelii)
Coordinates:12:7114066..7114342(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DSTN
Ensembl ID:ENSPPYG00000010727
Aliases:None
Description:destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750]


Retrocopy-Parental alignment summary:






>retro_pabe_812
GTAACTATAGCTGAGCCTTTCAAGCATTTTGTGGGAATTCTTCCTGAAAAAGATTGTCGCTATGCTTTGTATGATGCAAG
CTTTGAAACAAAAGAATCCAGAAGAATTGATGTTTTCTTGTGGGCATCAGAACTAGCACCTCTGAAAAGTAAAATGATCT
ATACAAGCTCCAAGGATGCAATCAAAAAGAAATTTCAAGGCATAAAACATGAATGGGAAACAAACAGACCAGAAGATCTC
AGTCGGGCTTGTATTGCTGAAAAGTTAGGTGGATCC

ORF - retro_pabe_812 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.98 %
Parental protein coverage: 56.97 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGI
VTI..PFKHFVG.LPEKDCRYALYDASFETKESR......FLWA.ELAPLKSKMIY.SSKDAIKKKFQGI
RetrocopyVTIAEPFKHFVGILPEKDCRYALYDASFETKESRRIDV--FLWASELAPLKSKMIYTSSKDAIKKKFQGI
ParentalKHECQANGPEDLNRACIAEKLGGS
KHE...N.PEDL.RACIAEKLGGS
RetrocopyKHEWETNRPEDLSRACIAEKLGGS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 47 .33 RPM
SRP007412_cerebellum 0 .12 RPM 45 .48 RPM
SRP007412_heart 0 .00 RPM 35 .97 RPM
SRP007412_kidney 0 .00 RPM 58 .93 RPM
SRP007412_liver 0 .00 RPM 28 .15 RPM
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_812 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_812 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_pabe_812 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_952
Pan troglodytes retro_ptro_659
Macaca mulatta retro_mmul_782

Parental genes homology:
Parental genes homology involve 21 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000154341 retrocopy
Choloepus hoffmanni ENSCHOG000000031105 retrocopies
Cavia porcellus ENSCPOG000000055732 retrocopies
Dasypus novemcinctus ENSDNOG000000009341 retrocopy
Erinaceus europaeus ENSEEUG000000118931 retrocopy
Homo sapiens ENSG000001258681 retrocopy
Gorilla gorilla ENSGGOG000000090071 retrocopy
Microcebus murinus ENSMICG000000136871 retrocopy
Macaca mulatta ENSMMUG000000137861 retrocopy
Mus musculus ENSMUSG000000159321 retrocopy
Nomascus leucogenys ENSNLEG000000096791 retrocopy
Oryctolagus cuniculus ENSOCUG000000274561 retrocopy
Ochotona princeps ENSOPRG000000009762 retrocopies
Pongo abelii ENSPPYG000000030475 retrocopies
Pongo abelii ENSPPYG00000010727 1 retrocopy
retro_pabe_812 ,
Pan troglodytes ENSPTRG000000132751 retrocopy
Pteropus vampyrus ENSPVAG000000004201 retrocopy
Rattus norvegicus ENSRNOG000000059241 retrocopy
Sus scrofa ENSSSCG000000070851 retrocopy
Tupaia belangeri ENSTBEG000000176348 retrocopies
Tursiops truncatus ENSTTRG000000072911 retrocopy



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