RetrogeneDB ID: | retro_ggor_768 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 12:7082230..7082669(+) | ||
| Located in intron of: | ENSGGOG00000003230 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DSTN | ||
| Ensembl ID: | ENSGGOG00000009007 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_768
GCCTCAGGAGCGCAAGTTGCTGATGAAGTATGTCGCATTTTTTATGACATGAGAGTTCGTAAATGCTCCACACCAGAAGA
AATCAAGAAAAGAACAAAGGCTGTCATTTTTTTGTCTCAGTGCAGACAAAAAGTGCATCATGTAGAAGGCAAAGAGATCT
TGGTTGGTTGGAGATGTTGGTGTAACTAAAAGTGAGCCTTTCAAGCATTTTGTGGGAATGCTTCCTGAAAAAGATTGTTA
CTATGCTTTGTATGATGCAAGCTTTGAAACAAAAGAATCCAGAAGAATTGATGTTTTCTTGTGGGCATCAGAACTAGCAC
CTTTGAAAAGTAAAATGATCTATACAAGCTCCAAGGATGCAATCAAAAAGAAATTTCAAGGCATAAAACATGAATGGCAA
ACAAACGGACCAGAAGATCTCAATCGGGCTTGTACTGCT
ORF - retro_ggor_768 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.88 % |
| Parental protein coverage: | 89.7 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIF-CLSADKKCIIVEEGKEILVGDVGVTITDPFKH |
| ASG.QVADEVCRIFYDM.VRKCSTPEEIKKR.KAVIF.CLSADKKCI........LVGDVGVT...PFKH | |
| Retrocopy | ASGAQVADEVCRIFYDMRVRKCSTPEEIKKRTKAVIF>CLSADKKCIM*KAKRSWLVGDVGVTKSEPFKH |
| Parental | FVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGP |
| FVGMLPEKDC.YALYDASFETKESR......FLWA.ELAPLKSKMIY.SSKDAIKKKFQGIKHE.Q.NGP | |
| Retrocopy | FVGMLPEKDCYYALYDASFETKESRRIDV--FLWASELAPLKSKMIYTSSKDAIKKKFQGIKHEWQTNGP |
| Parental | EDLNRACIA |
| EDLNRAC.A | |
| Retrocopy | EDLNRACTA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 101 .47 RPM |
| SRP007412_cerebellum | 0 .08 RPM | 62 .29 RPM |
| SRP007412_heart | 0 .00 RPM | 27 .96 RPM |
| SRP007412_kidney | 0 .00 RPM | 189 .60 RPM |
| SRP007412_liver | 0 .00 RPM | 109 .55 RPM |
| SRP007412_testis | 0 .10 RPM | 108 .47 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_768 was not experimentally validated.