RetrogeneDB ID: | retro_pcap_37 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_1733:13992..14338(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPCAG00000008816 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.85 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | PPVAPPAASVAAAAMGVQV-ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQE |
P..A.P......A.......E..S.....TFP...QTC.V.Y...LED.KKFDS.RD.NKPF.FML.KQ. | |
Retrocopy | PSTALPSQHLSNASSAFGI*ENFSLQARYTFP**NQTCLVQYRWRLEDSKKFDSRRDKNKPFNFMLSKQR |
Parental | VIRGWE-EGVAQMSVGQRAKLT-ISPDYAYGATGHPGIIPPNATLVFD |
VI...E..GVAQM...Q.A..T..S.DYAYG.TG...IIPP.ATLV.. | |
Retrocopy | VIQD*E<KGVAQMNSNQTAQWT<FSQDYAYGTTGYSDIIPPIATLVLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008303 | 4 retrocopies | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005868 | 16 retrocopies | |
Homo sapiens | ENSG00000088832 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001729 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015996 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019554 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032966 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000008816 | 2 retrocopies |
retro_pcap_289, retro_pcap_37 ,
|
Procavia capensis | ENSPCAG00000011316 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008822 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007188 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003547 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000011511 | 1 retrocopy |