RetrogeneDB ID: | retro_ptro_2703 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:84605885..84606935(+) | ||
Located in intron of: | ENSPTRG00000020396 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC2A14 | ||
Ensembl ID: | ENSPTRG00000004624 | ||
Aliases: | None | ||
Description: | solute carrier family 2 (facilitated glucose transporter), member 14 [Source:HGNC Symbol;Acc:18301] |
Percent Identity: | 80.97 % |
Parental protein coverage: | 69.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QVTPALIFAIAVATIGSFQFGYNTGVINAPETIIKEFINKTLTDKANAPPSEVLLTNLWSLSVAIFSIGG |
.VTPALI.AI.VATIGSFQ.GYNTGVI.APE.IIKEFIN.TL.D.AN.P.S..LLT.LWSLSVAIFSI.G | |
Retrocopy | KVTPALIAAITVATIGSFQVGYNTGVISAPEMIIKEFINNTLSDQANIPHSQMLLTSLWSLSVAIFSIVG |
Parental | MIGSFSVGLFVNRFGR-RNSMLIVNLLAATGG-CLMGLCKIAESVEMLILGRLVIGLFCGLCTGFVPMYI |
M.GSFSV.LF.N.F...R........L.A..G.CLMGLCK.AE.VEMLILG.LVIGLFCGLCTGF.PMYI | |
Retrocopy | MTGSFSVRLFINHFLT<RCNSMLIVNLLAVSGGCLMGLCKVAELVEMLILGCLVIGLFCGLCTGFMPMYI |
Parental | GEISPTALRGAFGTLNQLGIVIGILVAQIFGLE--LILGSEELWPVLLGFTILPAILQSAALPCCPESPR |
GEISPTAL.G.FGTLNQLGI...ILVAQIFGLE...ILGSEELWPVLLGFTILPAILQSAALP.CPESPR | |
Retrocopy | GEISPTALQGTFGTLNQLGIIVRILVAQIFGLEFKFILGSEELWPVLLGFTILPAILQSAALPFCPESPR |
Parental | FLLINRKKEENATRILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQ |
FLLINRK.EENA..ILQ.LWGTQDVSQD.QEM.DESARMSQEKQVT.LE.FRVSSY.QPII.SIVLQLS. | |
Retrocopy | FLLINRKEEENAK*ILQ*LWGTQDVSQDNQEMQDESARMSQEKQVTMLEFFRVSSYQQPIITSIVLQLSR |
Parental | QLSGINAVFYYSTGIFKDAGVQQPIYATISAGV-VNTIFTLVSLFLVERAGRRTLHMIGLGGMAFCSTLM |
QLSGIN.VFYYSTGIFKDAGVQ.PIYATI.AGV..NTIFT.VSLFL.E.AGRRTLHMIGLGGMAFCS.LM | |
Retrocopy | QLSGINVVFYYSTGIFKDAGVQEPIYATIGAGV>FNTIFTVVSLFLLETAGRRTLHMIGLGGMAFCSMLM |
Parental | TV |
TV | |
Retrocopy | TV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 1 .84 RPM |
SRP007412_cerebellum | 0 .11 RPM | 0 .11 RPM |
SRP007412_heart | 0 .12 RPM | 0 .20 RPM |
SRP007412_kidney | 0 .10 RPM | 0 .31 RPM |
SRP007412_liver | 0 .03 RPM | 0 .13 RPM |
SRP007412_testis | 0 .21 RPM | 469 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3983 |
Pongo abelii | retro_pabe_3274 |
Macaca mulatta | retro_mmul_2301 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004556 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018988 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003074 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009834 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011295 | 1 retrocopy | |
Felis catus | ENSFCAG00000001625 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000439 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026903 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008575 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004234 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004624 | 1 retrocopy |
retro_ptro_2703 ,
|
Pan troglodytes | ENSPTRG00000004626 | 1 retrocopy |