RetrogeneDB ID: | retro_ptro_2706 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:93086273..93086690(+) | ||
Located in intron of: | ENSPTRG00000020433 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSPTRG00000010012 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 84.17 % |
Parental protein coverage: | 75.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIE |
KY...VTLQKQ.VPF..YNGGVGRC.QAKQW.WTQG.WPKKSAEFLLHMLKNAESNAELK.LDVDSLVIE | |
Retrocopy | KYF*NVTLQKQHVPF*HYNGGVGRCTQAKQWDWTQGWWPKKSAEFLLHMLKNAESNAELKSLDVDSLVIE |
Parental | HIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
H.QVNKAP.M..RTYRAHGRIN.YM.SPCHIEM...EKEQIVPKPEE.VAQKK.ISQKKLKKQKLMA.E | |
Retrocopy | HLQVNKAPTMCQRTYRAHGRINSYMISPCHIEMVFSEKEQIVPKPEEAVAQKKEISQKKLKKQKLMAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 167 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 232 .84 RPM |
SRP007412_heart | 0 .00 RPM | 106 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 275 .85 RPM |
SRP007412_liver | 0 .00 RPM | 136 .70 RPM |
SRP007412_testis | 0 .00 RPM | 130 .99 RPM |