RetrogeneDB - Parental gene ENSMMUG00000018837 details

                            
>ENSMMUG00000018837
ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAA

GAACACTCGTGAAACTGCCCAGGCCATCAAGGGTATGCATATTCGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTAC

AGAAACAGTGCGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCCCAGGCCAAGCAGTGGGGCTGGACACAG

GGTCGGTGGCCCAAGAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTT

AGATGTAGATTCTCTGGTCATCGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGACGAACCTACAGAGCTCATG

GTCGCATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAGGAACAGATTGTTCCTAAACCA

GAAGAGGAAGTTGCCCAGAAGAAAAAGTTGAAGAGCTCAAGCTCGGGAAAATGGTGTGCATTCCTTGTATCGTCATTCCA

GTTCTGCTCTGGATCTACAAAAAATTCCTGGAGCCATACATATACCCTCTGA

Library	Parental gene expression (RPM)
SRP007412_brain	105 .22 RPM
SRP007412_brain_prefrontal_cortex	147 .16 RPM
SRP007412_cerebellum	110 .75 RPM
SRP007412_heart	135 .38 RPM
SRP007412_kidney	159 .50 RPM
SRP007412_liver	114 .12 RPM
SRP007412_testis	101 .55 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009498	possible_ortholog	40 retrogenes	retro_amel_1147, retro_amel_1150, retro_amel_1252, retro_amel_1273, retro_amel_132, retro_amel_1422, retro_amel_1435, retro_amel_1487, retro_amel_1541, retro_amel_156, retro_amel_1567, retro_amel_1582, retro_amel_1599, retro_amel_1622, retro_amel_1624, retro_amel_1652, retro_amel_1703, retro_amel_1704, retro_amel_1743, retro_amel_1757, retro_amel_184, retro_amel_1908, retro_amel_1922, retro_amel_208, retro_amel_359, retro_amel_401, retro_amel_425, retro_amel_426, retro_amel_452, retro_amel_486, retro_amel_589, retro_amel_731, retro_amel_736, retro_amel_780, retro_amel_820, retro_amel_834, retro_amel_865, retro_amel_950, retro_amel_953, retro_amel_980,
Bos taurus	ENSBTAG00000022902	possible_ortholog	5 retrogenes	retro_btau_164, retro_btau_221, retro_btau_4, retro_btau_50, retro_btau_75,
Canis familiaris	ENSCAFG00000019044	possible_ortholog	7 retrogenes	retro_cfam_102, retro_cfam_171, retro_cfam_175, retro_cfam_189, retro_cfam_2, retro_cfam_239, retro_cfam_34,
Callithrix jacchus	ENSCJAG00000004779	possible_ortholog	4 retrogenes	retro_cjac_122, retro_cjac_248, retro_cjac_360, retro_cjac_376,
Cavia porcellus	ENSCPOG00000019337	possible_ortholog	31 retrogenes	retro_cpor_1004, retro_cpor_1005, retro_cpor_1015, retro_cpor_1050, retro_cpor_1083, retro_cpor_1118, retro_cpor_1125, retro_cpor_1227, retro_cpor_1271, retro_cpor_1305, retro_cpor_1413, retro_cpor_1455, retro_cpor_1539, retro_cpor_159, retro_cpor_213, retro_cpor_238, retro_cpor_272, retro_cpor_319, retro_cpor_374, retro_cpor_50, retro_cpor_521, retro_cpor_662, retro_cpor_675, retro_cpor_776, retro_cpor_784, retro_cpor_792, retro_cpor_827, retro_cpor_872, retro_cpor_924, retro_cpor_943, retro_cpor_955,
Equus caballus	ENSECAG00000011547	possible_ortholog	9 retrogenes	retro_ecab_162, retro_ecab_331, retro_ecab_488, retro_ecab_584, retro_ecab_620, retro_ecab_678, retro_ecab_751, retro_ecab_939, retro_ecab_977,
Felis catus	ENSFCAG00000011342	possible_ortholog	43 retrogenes	retro_fcat_1002, retro_fcat_1004, retro_fcat_1019, retro_fcat_1050, retro_fcat_1065, retro_fcat_1196, retro_fcat_1235, retro_fcat_1300, retro_fcat_1322, retro_fcat_1426, retro_fcat_1427, retro_fcat_1432, retro_fcat_1516, retro_fcat_1525, retro_fcat_1539, retro_fcat_1552, retro_fcat_1588, retro_fcat_1655, retro_fcat_1692, retro_fcat_1699, retro_fcat_1703, retro_fcat_1740, retro_fcat_1746, retro_fcat_1821, retro_fcat_1864, retro_fcat_1892, retro_fcat_1917, retro_fcat_2023, retro_fcat_211, retro_fcat_264, retro_fcat_360, retro_fcat_461, retro_fcat_481, retro_fcat_488, retro_fcat_532, retro_fcat_607, retro_fcat_734, retro_fcat_791, retro_fcat_808, retro_fcat_855, retro_fcat_900, retro_fcat_917, retro_fcat_988,
Homo sapiens	ENSG00000215472	ortholog_one2one	1 retrogene	retro_hsap_2367,
Homo sapiens	ENSG00000265681	possible_ortholog	33 retrogenes	retro_hsap_1158, retro_hsap_1382, retro_hsap_1423, retro_hsap_1448, retro_hsap_1590, retro_hsap_172, retro_hsap_1728, retro_hsap_1751, retro_hsap_1783, retro_hsap_181, retro_hsap_1893, retro_hsap_1938, retro_hsap_202, retro_hsap_2149, retro_hsap_2398, retro_hsap_2457, retro_hsap_2491, retro_hsap_2582, retro_hsap_2786, retro_hsap_2905, retro_hsap_2933, retro_hsap_295, retro_hsap_3176, retro_hsap_3475, retro_hsap_356, retro_hsap_3620, retro_hsap_3798, retro_hsap_3932, retro_hsap_3943, retro_hsap_3967, retro_hsap_3988, retro_hsap_714, retro_hsap_735,
Gorilla gorilla	ENSGGOG00000026697	possible_ortholog	1 retrogene	retro_ggor_167,
Latimeria chalumnae	ENSLACG00000008835	possible_ortholog	1 retrogene	retro_lcha_38,
Loxodonta africana	ENSLAFG00000005569	possible_ortholog	16 retrogenes	retro_lafr_1001, retro_lafr_1036, retro_lafr_1060, retro_lafr_1130, retro_lafr_177, retro_lafr_186, retro_lafr_207, retro_lafr_213, retro_lafr_256, retro_lafr_293, retro_lafr_354, retro_lafr_721, retro_lafr_731, retro_lafr_773, retro_lafr_860, retro_lafr_933,
Myotis lucifugus	ENSMLUG00000025554	possible_ortholog	22 retrogenes	retro_mluc_1141, retro_mluc_1224, retro_mluc_1300, retro_mluc_1375, retro_mluc_1468, retro_mluc_1500, retro_mluc_1547, retro_mluc_1579, retro_mluc_1739, retro_mluc_1755, retro_mluc_1822, retro_mluc_1870, retro_mluc_1959, retro_mluc_2018, retro_mluc_2027, retro_mluc_2036, retro_mluc_2059, retro_mluc_2165, retro_mluc_2198, retro_mluc_719, retro_mluc_835, retro_mluc_929,
Myotis lucifugus	ENSMLUG00000029264	possible_ortholog	36 retrogenes	retro_mluc_1043, retro_mluc_1060, retro_mluc_1061, retro_mluc_1081, retro_mluc_1094, retro_mluc_1163, retro_mluc_1193, retro_mluc_1206, retro_mluc_123, retro_mluc_1230, retro_mluc_1241, retro_mluc_1416, retro_mluc_157, retro_mluc_1581, retro_mluc_1652, retro_mluc_1677, retro_mluc_1693, retro_mluc_170, retro_mluc_1711, retro_mluc_1848, retro_mluc_1890, retro_mluc_2003, retro_mluc_2064, retro_mluc_2095, retro_mluc_2125, retro_mluc_2387, retro_mluc_2636, retro_mluc_2637, retro_mluc_661, retro_mluc_734, retro_mluc_763, retro_mluc_779, retro_mluc_785, retro_mluc_807, retro_mluc_938, retro_mluc_977,
Monodelphis domestica	ENSMODG00000003534	possible_ortholog	11 retrogenes	retro_mdom_1153, retro_mdom_1194, retro_mdom_1437, retro_mdom_1734, retro_mdom_1783, retro_mdom_1980, retro_mdom_321, retro_mdom_337, retro_mdom_491, retro_mdom_541, retro_mdom_91,
Mustela putorius furo	ENSMPUG00000000801	possible_ortholog	7 retrogenes	retro_mputfur_1008, retro_mputfur_126, retro_mputfur_1349, retro_mputfur_16, retro_mputfur_184, retro_mputfur_40, retro_mputfur_536,
Mus musculus	ENSMUSG00000062328	possible_ortholog	80 retrogenes	retro_mmus_1002, retro_mmus_1004, retro_mmus_1011, retro_mmus_1024, retro_mmus_1032, retro_mmus_1040, retro_mmus_1042, retro_mmus_1087, retro_mmus_1138, retro_mmus_1205, retro_mmus_1208, retro_mmus_1218, retro_mmus_1222, retro_mmus_1226, retro_mmus_1259, retro_mmus_1263, retro_mmus_1308, retro_mmus_1346, retro_mmus_1395, retro_mmus_1404, retro_mmus_1484, retro_mmus_1499, retro_mmus_1502, retro_mmus_1710, retro_mmus_1840, retro_mmus_1842, retro_mmus_1935, retro_mmus_201, retro_mmus_2016, retro_mmus_2034, retro_mmus_2076, retro_mmus_2099, retro_mmus_2124, retro_mmus_2156, retro_mmus_2203, retro_mmus_2261, retro_mmus_2262, retro_mmus_2343, retro_mmus_2345, retro_mmus_243, retro_mmus_2468, retro_mmus_2550, retro_mmus_2613, retro_mmus_2634, retro_mmus_2724, retro_mmus_2759, retro_mmus_2773, retro_mmus_2775, retro_mmus_288, retro_mmus_2919, retro_mmus_3003, retro_mmus_302, retro_mmus_3037, retro_mmus_3049, retro_mmus_310, retro_mmus_311, retro_mmus_314, retro_mmus_327, retro_mmus_334, retro_mmus_3354, retro_mmus_337, retro_mmus_3490, retro_mmus_3601, retro_mmus_3687, retro_mmus_388, retro_mmus_419, retro_mmus_420, retro_mmus_523, retro_mmus_525, retro_mmus_529, retro_mmus_661, retro_mmus_673, retro_mmus_741, retro_mmus_773, retro_mmus_828, retro_mmus_871, retro_mmus_879, retro_mmus_922, retro_mmus_948, retro_mmus_966,
Oryctolagus cuniculus	ENSOCUG00000012485	possible_ortholog	2 retrogenes	retro_ocun_1433, retro_ocun_231,
Pan troglodytes	ENSPTRG00000010012	possible_ortholog	51 retrogenes	retro_ptro_1069, retro_ptro_1130, retro_ptro_1193, retro_ptro_1215, retro_ptro_1227, retro_ptro_1267, retro_ptro_1271, retro_ptro_1294, retro_ptro_1308, retro_ptro_1350, retro_ptro_1443, retro_ptro_1509, retro_ptro_161, retro_ptro_1634, retro_ptro_1651, retro_ptro_1653, retro_ptro_1682, retro_ptro_1733, retro_ptro_1790, retro_ptro_183, retro_ptro_1887, retro_ptro_1963, retro_ptro_2059, retro_ptro_2267, retro_ptro_2270, retro_ptro_2355, retro_ptro_2392, retro_ptro_2404, retro_ptro_242, retro_ptro_2450, retro_ptro_2486, retro_ptro_2498, retro_ptro_2515, retro_ptro_2576, retro_ptro_2659, retro_ptro_2675, retro_ptro_2680, retro_ptro_2693, retro_ptro_2706, retro_ptro_2787, retro_ptro_280, retro_ptro_2997, retro_ptro_3073, retro_ptro_490, retro_ptro_509, retro_ptro_523, retro_ptro_719, retro_ptro_793, retro_ptro_948, retro_ptro_973, retro_ptro_985,
Rattus norvegicus	ENSRNOG00000018680	possible_ortholog	48 retrogenes	retro_rnor_1028, retro_rnor_1146, retro_rnor_1256, retro_rnor_1281, retro_rnor_1297, retro_rnor_1419, retro_rnor_1469, retro_rnor_1470, retro_rnor_1495, retro_rnor_1504, retro_rnor_1533, retro_rnor_1587, retro_rnor_1603, retro_rnor_1629, retro_rnor_1678, retro_rnor_1856, retro_rnor_1900, retro_rnor_1902, retro_rnor_1911, retro_rnor_1912, retro_rnor_1942, retro_rnor_1980, retro_rnor_2011, retro_rnor_218, retro_rnor_2243, retro_rnor_2348, retro_rnor_242, retro_rnor_2519, retro_rnor_2570, retro_rnor_2572, retro_rnor_2634, retro_rnor_2796, retro_rnor_419, retro_rnor_441, retro_rnor_554, retro_rnor_613, retro_rnor_667, retro_rnor_738, retro_rnor_762, retro_rnor_774, retro_rnor_803, retro_rnor_815, retro_rnor_837, retro_rnor_877, retro_rnor_932, retro_rnor_934, retro_rnor_972, retro_rnor_982,
Sarcophilus harrisii	ENSSHAG00000003060	possible_ortholog	14 retrogenes	retro_shar_206, retro_shar_214, retro_shar_279, retro_shar_387, retro_shar_457, retro_shar_586, retro_shar_593, retro_shar_606, retro_shar_713, retro_shar_743, retro_shar_751, retro_shar_800, retro_shar_802, retro_shar_817,
Sus scrofa	ENSSSCG00000029642	possible_ortholog	30 retrogenes	retro_sscr_1002, retro_sscr_1003, retro_sscr_1033, retro_sscr_1067, retro_sscr_108, retro_sscr_110, retro_sscr_1106, retro_sscr_111, retro_sscr_1151, retro_sscr_1170, retro_sscr_121, retro_sscr_180, retro_sscr_340, retro_sscr_370, retro_sscr_386, retro_sscr_403, retro_sscr_413, retro_sscr_442, retro_sscr_460, retro_sscr_481, retro_sscr_496, retro_sscr_502, retro_sscr_592, retro_sscr_613, retro_sscr_768, retro_sscr_823, retro_sscr_848, retro_sscr_857, retro_sscr_881, retro_sscr_931,
Ictidomys tridecemlineatus	ENSSTOG00000005193	possible_ortholog	33 retrogenes	retro_itri_1006, retro_itri_1015, retro_itri_1066, retro_itri_1070, retro_itri_1148, retro_itri_1212, retro_itri_1238, retro_itri_1312, retro_itri_1351, retro_itri_1360, retro_itri_1385, retro_itri_1424, retro_itri_1451, retro_itri_1476, retro_itri_1479, retro_itri_1625, retro_itri_1648, retro_itri_1712, retro_itri_181, retro_itri_213, retro_itri_300, retro_itri_320, retro_itri_400, retro_itri_425, retro_itri_513, retro_itri_575, retro_itri_601, retro_itri_621, retro_itri_625, retro_itri_708, retro_itri_816, retro_itri_834, retro_itri_949,
Vicugna pacos	ENSVPAG00000009568	possible_ortholog	1 retrogene	retro_vpac_10,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_46	97.94	52.72	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmul_163	97.83	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmul_172	96.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_mmul_474	94.08	82.07	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_mmul_589	67.24	63.04	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_mmul_652	92.82	98.37	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_mmul_669	82.17	70.11	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_mmul_825	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_mmul_956	64.49	57.07	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_mmul_971	65.17	95.11	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_mmul_1015	78.91	69.02	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_mmul_1046	97.28	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_mmul_1205	66.13	66.30	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_mmul_1216	99.46	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_mmul_1225	65.54	94.02	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_mmul_1441	85.82	72.83	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_mmul_1784	67.94	67.93	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_mmul_1858	61.96	99.46	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_mmul_1952	87.10	100.00	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_mmul_2006	66.21	69.95	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_mmul_2008	85.41	100.00	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_mmul_2257	72.08	82.61	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_mmul_2268	79.14	80.30	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_mmul_2284	88.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_mmul_2304	57.58	71.20	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_mmul_2512	96.76	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000018837 retrocopies

Parental gene:	MMU.17950, ENSMMUG00000018837
Aliases:	None
Description:	60S ribosomal protein L17 [Source:RefSeq peptide;Acc:NP_001180491]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	18:42518962..42531439(-)

Parental gene:

MMU.17950, ENSMMUG00000018837