Parental gene:

RPL17-C18orf32, ENSPPYG00000009151

Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:Orangutan (Pongo abelii)
Coordinates:18:61878824..61880723(-)


>ENSPPYG00000009151
ATGCAAATCAAGAGGCCAATCTTCGTGTTCACTTTAAGGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATAT
ACGAAAAGCCACGAAGTATCTGAAAGACGTCACTTTACAGAAACAGTGTGTACCATTCCGACGTTACAATGGTGGAGTTG
GCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAAGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATG
CTTAAAAACGCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAA
AGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACATACATGAGCTCTCCCTGCCACATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .22 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .09 RPM
SRP007412_kidney 0 .07 RPM
SRP007412_liver 0 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 ortholog_one2one 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000011547 possible_ortholog 9 retrogenes
Echinops telfairi ENSETEG00000011322 ortholog_one2one 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 possible_ortholog 1 retrogene
Loxodonta africana ENSLAFG00000005569 possible_ortholog 16 retrogenes
Macropus eugenii ENSMEUG00000016709 ortholog_one2one 26 retrogenes
Microcebus murinus ENSMICG00000017102 ortholog_one2one 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 ortholog_one2one 8 retrogenes
Pan troglodytes ENSPTRG00000010012 possible_ortholog 51 retrogenes
Pteropus vampyrus ENSPVAG00000001969 ortholog_one2one 76 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Sus scrofa ENSSSCG00000029642 possible_ortholog 30 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000005193 possible_ortholog 33 retrogenes
Tarsius syrichta ENSTSYG00000007402 ortholog_one2one 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 ortholog_one2one 31 retrogenes
Vicugna pacos ENSVPAG00000009568 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_347 94.12 90.08
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2. retro_pabe_539 53.49 95.42
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3. retro_pabe_567 89.76 96.18
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4. retro_pabe_617 91.34 96.18
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5. retro_pabe_882 78.40 93.89
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6. retro_pabe_1177 73.81 95.42
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7. retro_pabe_1178 72.22 95.42
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8. retro_pabe_1179 73.81 95.42
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9. retro_pabe_1197 78.76 86.26
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10. retro_pabe_1373 76.36 82.44
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11. retro_pabe_1408 86.55 89.31
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12. retro_pabe_1448 71.70 78.63
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13. retro_pabe_1464 80.77 79.39
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14. retro_pabe_1531 80.34 89.31
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15. retro_pabe_1565 72.38 77.86
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16. retro_pabe_1574 79.37 95.42
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17. retro_pabe_1725 77.78 95.42
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18. retro_pabe_1807 60.48 93.13
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19. retro_pabe_1832 69.07 73.28
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20. retro_pabe_1902 63.54 72.52
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21. retro_pabe_2052 65.67 100.00
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22. retro_pabe_2053 68.18 65.65
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23. retro_pabe_2088 70.87 95.42
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24. retro_pabe_2102 78.65 67.18
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25. retro_pabe_2164 65.83 89.31
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26. retro_pabe_2231 83.46 96.18
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27. retro_pabe_2317 74.80 95.42
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28. retro_pabe_2520 81.89 96.18
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29. retro_pabe_2635 65.57 89.31
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30. retro_pabe_2638 75.78 95.42
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31. retro_pabe_2871 88.14 89.31
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32. retro_pabe_2917 94.49 96.18
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33. retro_pabe_2921 69.29 95.42
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34. retro_pabe_2971 83.59 96.18
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35. retro_pabe_3020 57.89 84.73
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36. retro_pabe_3029 69.53 95.42
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37. retro_pabe_3103 87.39 89.31
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38. retro_pabe_3187 65.55 89.31
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39. retro_pabe_3248 86.55 89.31
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40. retro_pabe_3253 64.17 88.55
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41. retro_pabe_3262 70.83 72.52
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42. retro_pabe_3277 78.35 74.05
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43. retro_pabe_3493 59.22 78.63
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Download FASTA sequences of all ENSPPYG00000009151 retrocopies