Parental gene:

RPL17-C18orf32, ENSMEUG00000016709

Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_8456:16033..22012(-)


>ENSMEUG00000016709
AACACCCGTGAAACAGCCCAAGCTATCAAGGGCATGCATATCCGAAAAGCTACCAAATATTTGAAAGATGTCACATTGAA
GAAACAATGTGTTCCCTTCCGTCGGTATAATGGTGGAGTTGGCAGGTGTGCCCAGGCTAAGCAGTGGGGTTGGACACAGG
GTCGCTGGCCCAAAAAGAGTGCTGAATTCTTGCTGCATATGCTGAAAAATGCAGAGAGTAACGCAGAACTGAAGGGGTTG
GATGTGGATTCTCTTGTCATTGAGCATATCCAGGTTAACAAGGCTCCCAAAATGCGACGGCGTACTTACAGGGCTCATGG
TCGAATCAACGTACATGAGTTCTCCTTGTCATATTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 ortholog_one2one 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000011547 possible_ortholog 9 retrogenes
Echinops telfairi ENSETEG00000011322 ortholog_one2one 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 possible_ortholog 1 retrogene
Loxodonta africana ENSLAFG00000005569 possible_ortholog 16 retrogenes
Microcebus murinus ENSMICG00000017102 ortholog_one2one 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 ortholog_one2one 8 retrogenes
Pongo abelii ENSPPYG00000009151 ortholog_one2one 43 retrogenes
Pan troglodytes ENSPTRG00000010012 possible_ortholog 51 retrogenes
Pteropus vampyrus ENSPVAG00000001969 ortholog_one2one 76 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Sus scrofa ENSSSCG00000029642 possible_ortholog 30 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000005193 possible_ortholog 33 retrogenes
Tarsius syrichta ENSTSYG00000007402 ortholog_one2one 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 ortholog_one2one 31 retrogenes
Vicugna pacos ENSVPAG00000009568 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_meug_58 62.64 76.27
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2. retro_meug_81 75.89 94.92
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3. retro_meug_127 84.35 97.46
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4. retro_meug_188 89.09 93.22
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5. retro_meug_191 61.22 81.36
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6. retro_meug_204 76.79 93.22
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7. retro_meug_257 77.14 88.14
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8. retro_meug_326 63.27 83.05
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9. retro_meug_355 97.27 93.22
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10. retro_meug_373 75.44 94.92
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11. retro_meug_410 81.63 78.81
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12. retro_meug_413 74.77 93.22
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13. retro_meug_509 76.53 83.05
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14. retro_meug_703 79.49 65.25
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15. retro_meug_738 55.29 70.34
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16. retro_meug_740 77.19 94.92
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17. retro_meug_779 50.89 94.92
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18. retro_meug_934 68.37 80.51
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19. retro_meug_1111 71.82 93.22
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20. retro_meug_1285 85.71 94.92
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21. retro_meug_1485 78.38 93.22
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22. retro_meug_1821 91.82 93.22
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23. retro_meug_1886 65.18 93.22
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24. retro_meug_2159 73.81 71.19
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25. retro_meug_2167 73.45 94.92
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26. retro_meug_2183 77.78 97.46
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Download FASTA sequences of all ENSMEUG00000016709 retrocopies