RetrogeneDB ID: | retro_lafr_207 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_1:52341439..52341961(-) | ||
Located in intron of: | ENSLAFG00000007410 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSLAFG00000005569 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.32 % |
Parental protein coverage: | 96.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | DPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQW |
DP...TKSCKSRGSNL.V.FKNT.ETAQAIKGMHIRKATKYLKDVT.QKQ.V.F..Y.GGVGRCAQA..W | |
Retrocopy | DPKTSTKSCKSRGSNLQVYFKNTHETAQAIKGMHIRKATKYLKDVTSQKQRVLFQHY-GGVGRCAQARPW |
Parental | GWTQGRWPK-KSAEFLLHMLKNAESNAELKGLD-VDSL-VIEHIQVN-KAPKMRRRTYRAHGRINPYMSS |
G...G...K.KSAE.LLH...NA.SNAE.KGL..VDSL.VIEHIQVN.K.P..R.RTYRAHG.INPY.SS | |
Retrocopy | GCIPGW*SK<KSAESLLHTPQNADSNAEFKGLK<VDSL<VIEHIQVN>KPP--RCRTYRAHGQINPYVSS |
Parental | PCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQ-KLMARE |
P....MI.TEKEQIVPKPEE.V.QKKKI.QKKLKKQ.KL.ARE | |
Retrocopy | PAMPCMIRTEKEQIVPKPEEKVTQKKKIPQKKLKKQ<KLTARE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |