RetrogeneDB ID: | retro_rnor_978 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:94092042..94092330(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000043025 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Znrd1 | ||
Ensembl ID: | ENSRNOG00000000779 | ||
Aliases: | Znrd1, HTEX-6, Tctex6 | ||
Description: | DNA-directed RNA polymerase I subunit RPA12 [Source:UniProtKB/Swiss-Prot;Acc:Q6MFY5] |
Percent Identity: | 75. % |
Parental protein coverage: | 78.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MELARPCSNFQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVD |
.ELARPCSNF.SDLD.CPDCGSVL.LPG..DTVICPRCGFSI.VRDF.GKVVKTSVVFNKLG..IPMSVD | |
Retrocopy | IELARPCSNFGSDLDSCPDCGSVLLLPGAYDTVICPRCGFSINVRDFEGKVVKTSVVFNKLGAAIPMSVD |
Parental | EGPESQGPVVDRRCSRCGHEGMAYYT |
.GPESQGP.VD....R....G....T | |
Retrocopy | KGPESQGPGVDGHDQRSHGNGLPHQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .44 RPM |
SRP017611_liver | 0 .07 RPM | 4 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007328 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015720 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000007272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016023 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007474 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000779 | 1 retrocopy |
retro_rnor_978 ,
|
Sorex araneus | ENSSARG00000009716 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001554 | 1 retrocopy |