RetrogeneDB ID: | retro_sara_745 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_64063:803..1099(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNRD1 | ||
Ensembl ID: | ENSSARG00000009716 | ||
Aliases: | None | ||
Description: | zinc ribbon domain containing 1 [Source:HGNC Symbol;Acc:13182] |
Percent Identity: | 81. % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LPGAQETVTCTRCGFSINVLDFEGKVVKTSVVFNKLGTAVPVSIEDGQ-EFQGPLIDRRCSRCGHEGMAY |
LPGAQET.TC..CGF.INVLDF..KVVKTSVVFNKLGTA.PVS.E.GQ.EFQGP.IDRRCS.CGHEGMAY | |
Retrocopy | LPGAQETITCPLCGFPINVLDFKEKVVKTSVVFNKLGTAMPVSVETGQ>EFQGPMIDRRCS*CGHEGMAY |
Parental | HTRQMRSADEGQTVFY-TCTKCRFQEKEDS |
HTRQM..ADEGQTVFY..CT.C.FQE.EDS | |
Retrocopy | HTRQMCLADEGQTVFY>QCTNCKFQE*EDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007328 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015720 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000007272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016023 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007474 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000779 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009716 | 2 retrocopies |
retro_sara_431, retro_sara_745 ,
|
Sarcophilus harrisii | ENSSHAG00000001554 | 1 retrocopy |