RetrogeneDB ID: | retro_shar_796 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864869.1:1334952..1335250(-) | ||
Located in intron of: | ENSSHAG00000013362 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNRD1 | ||
Ensembl ID: | ENSSHAG00000001554 | ||
Aliases: | None | ||
Description: | zinc ribbon domain containing 1 [Source:HGNC Symbol;Acc:13182] |
Percent Identity: | 50.98 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FAMDPSAASSSFLSDSDFCT--ECGSILPLPGALDTVTCPRCGFSIDVREFEGKVVETSIVFHKLGTTAL |
FAMD....S.S..S.S..C...E.GS...L.G.LD...CPR..FSID...F.GKV..TS.VFHKL.TT.L | |
Retrocopy | FAMDLPLLSAS*NSLSILCLNPESGSTFFLVGILDIDICPRYDFSIDMWDFKGKVEKTSVVFHKLRTTSL |
Parental | IVSEEEGPELQGPVIDR-RCSNCGHEGMAYHT |
.VS....PE..G.V.D....S.CG.EG.AY.T | |
Retrocopy | LVS--K*PEI*GAVTDK>AGSTCGCEGVAYYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007328 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015720 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000007272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016023 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007474 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000779 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009716 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001554 | 1 retrocopy |
retro_shar_796 ,
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