RetrogeneDB ID:

retro_sara_127

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_3922:17104..17410(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ERH
Ensembl ID:ENSSARG00000005558
Aliases:None
Description:enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447]


Retrocopy-Parental alignment summary:






>retro_sara_127
TACACCATTTTACTGGTCCAGCTTATCAAGAAGCCAGAAGGCAGAACTTATGCTGACTATGAATCTTTGAATGAATGCAT
GGAAGGTGTTTGTAAAATGTACGAAGAACATCTGAAGAGAATGAATCCCAACAGCCTCTATATCACATAGAATATTGGTC
AATTGTTTGATTTTATTGATGATCTGGCAGACTCCAGCTGCCTTGTTTACCGAGATGATACTCAGACATACCAGCCTTAC
AACAAGGACTGGATTAAAGAGAAGATCTATGTGCTTCTTCGTTGGCTGGCCCAGCAGGCCGGGAAA

ORF - retro_sara_127 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.27 %
Parental protein coverage: 98.08 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVY
.TILLVQ..K.PEGRTYADYES.NECMEGVCKMYEEHLKRMNPNS..IT..I.QLFDFIDDLAD.SCLVY
RetrocopyYTILLVQLIKKPEGRTYADYESLNECMEGVCKMYEEHLKRMNPNSLYIT*NIGQLFDFIDDLADSSCLVY
ParentalRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK
R.DTQTYQPYNKDWIKEKIYVLLR..AQQAGK
RetrocopyRDDTQTYQPYNKDWIKEKIYVLLRWLAQQAGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_127 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000149402 retrocopies
Equus caballus ENSECAG000000191781 retrocopy
Gorilla gorilla ENSGGOG000000047512 retrocopies
Microcebus murinus ENSMICG000000096231 retrocopy
Myotis lucifugus ENSMLUG000000118791 retrocopy
Nomascus leucogenys ENSNLEG000000015142 retrocopies
Oryctolagus cuniculus ENSOCUG000000046361 retrocopy
Pan troglodytes ENSPTRG000000064822 retrocopies
Sorex araneus ENSSARG00000005558 11 retrocopies



Copyright © RetrogeneDB 2014-2017