RetrogeneDB ID: | retro_sara_251 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_131482:3857..4114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ERH | ||
Ensembl ID: | ENSSARG00000005558 | ||
Aliases: | None | ||
Description: | enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447] |
Percent Identity: | 60.42 % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | HTILLVQP-TKRP-EGRTYADYESVNECMEGV-CKMYEEHLKRMNPNSPSITY-DISQLFDFIDDLA-DL |
H.I.LVQ....RP..G.T.AD..S..ECM.G..CK..EEHL.R...NSPSI...D.SQ.FDFI..LA.DL | |
Retrocopy | HAIVLVQA<SERP<RGGTDADRQS-DECMGGL<CKVCEEHLRRTSLNSPSISV<DTSQVFDFIVELALDL |
Parental | SCLVYRADTQTYQPYNKDWIKEKIYV |
SCLV.....QT.QPYNKDWIKEKIY. | |
Retrocopy | SCLV----SQTHQPYNKDWIKEKIYM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014940 | 2 retrocopies | |
Equus caballus | ENSECAG00000019178 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004751 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000009623 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011879 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001514 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006482 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005558 | 11 retrocopies |
retro_sara_114, retro_sara_127, retro_sara_151, retro_sara_221, retro_sara_251 , retro_sara_295, retro_sara_298, retro_sara_490, retro_sara_56, retro_sara_58, retro_sara_66,
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