RetrogeneDB ID: | retro_sara_490 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_224830:4425..4685(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ERH | ||
Ensembl ID: | ENSSARG00000005558 | ||
Aliases: | None | ||
Description: | enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447] |
Percent Identity: | 70.45 % |
Parental protein coverage: | 82.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSHTILLVQPTKRPEGRTYADY-ESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQL-FDFIDDLADLS |
MS.TILLVQPTK..EGR.YA.Y.E.VN.C..GVCKM.EE.LKRMNPN.P.ITY.IS.L.FDF...LADLS | |
Retrocopy | MSPTILLVQPTKKSEGRIYAQY>ECVNACVQGVCKMQEEPLKRMNPNRPYITYAISLL>FDFVTHLADLS |
Parental | CLVYRADTQTYQPYNKDW |
CLV..ADTQ..QP.N.DW | |
Retrocopy | CLV*QADTQPDQPSNIDW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014940 | 2 retrocopies | |
Equus caballus | ENSECAG00000019178 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004751 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000009623 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011879 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001514 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006482 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005558 | 11 retrocopies |
retro_sara_114, retro_sara_127, retro_sara_151, retro_sara_221, retro_sara_251, retro_sara_295, retro_sara_298, retro_sara_490 , retro_sara_56, retro_sara_58, retro_sara_66,
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