RetrogeneDB ID:

retro_sara_537

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_231822:1250..1606(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS14
Ensembl ID:ENSSARG00000014249
Aliases:None
Description:ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]


Retrocopy-Parental alignment summary:






>retro_sara_537
TTTGCATCCTTTAATGACACTTTGTCCATGTCACTGATCTTTCTGGCAAGAAAACCATCTGCCGTGTGACTGCAGATGAG
ATGAAGGTGAAGGTGGACCGAGATGAGTCCTTTCCGTATGCTGCCATGTTGGCTGCCCAGGATGTGGCCCAGTGGTGCCA
GTTGTTGGGCATCACTGCTCTCCGCATCAAACTCCGGACTACAGGAGGAAATCAGACCAAGATTCCTGGACCTGGGGCGC
AGTCAGCCCTTAGAGCCCATGCACGCTCAGGAATGAAGATTGGGAGGATCGAGGATGTCACCCCCATCCAATCCGACAGC
ACCTGCAGAAAGGGGGGTCGCCGTGGTCACCATCTG

ORF - retro_sara_537 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.17 %
Parental protein coverage: 78.15 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalFASFNDT-FVHVTDLSGKETICRVTGG-MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATG
FASFNDT.FVHVTDLSGK.TICRVT...MKVK.DRDES.PYAAMLAAQDVAQ.C..LGITAL.IKLR.TG
RetrocopyFASFNDT<FVHVTDLSGKKTICRVTADEMKVKVDRDESFPYAAMLAAQDVAQWCQLLGITALRIKLRTTG
ParentalGNRTKTPGPGAQSALRAMARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
GN.TK.PGPGAQSALRA.ARSGMKIGRIEDVTPI.SDST.RKGGRRG..L
RetrocopyGNQTKIPGPGAQSALRAHARSGMKIGRIEDVTPIQSDSTCRKGGRRGHHL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_537 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 60 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000046442 retrocopies
Bos taurus ENSBTAG000000085702 retrocopies
Canis familiaris ENSCAFG000000180942 retrocopies
Callithrix jacchus ENSCJAG000000209811 retrocopy
Cavia porcellus ENSCPOG000000244082 retrocopies
Dipodomys ordii ENSDORG000000071462 retrocopies
Gorilla gorilla ENSGGOG000000245938 retrocopies
Latimeria chalumnae ENSLACG000000161641 retrocopy
Loxodonta africana ENSLAFG000000311952 retrocopies
Macropus eugenii ENSMEUG000000149071 retrocopy
Microcebus murinus ENSMICG000000029002 retrocopies
Myotis lucifugus ENSMLUG000000132794 retrocopies
Macaca mulatta ENSMMUG000000028485 retrocopies
Mustela putorius furoENSMPUG000000137761 retrocopy
Nomascus leucogenys ENSNLEG000000103661 retrocopy
Oryctolagus cuniculus ENSOCUG000000115091 retrocopy
Otolemur garnettii ENSOGAG000000007211 retrocopy
Procavia capensis ENSPCAG000000159603 retrocopies
Pan troglodytes ENSPTRG000000174188 retrocopies
Rattus norvegicus ENSRNOG0000001877410 retrocopies
Sorex araneus ENSSARG00000014249 1 retrocopy
retro_sara_537 ,



Copyright © RetrogeneDB 2014-2017