Parental gene:

RPS14, ENSPTRG00000017418

Aliases:None
Description:ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:151307597..151313121(-)


>ENSPTRG00000017418
ATGGCACCTCGAAAGGGGAAGGAAAAGAAGGAAGAACAGGTCATCAGCCTCGGACCTCAGGTGGCTGAAGGAGAGAATGT
ATTTGGTGTCTGCCATATCTTTGCATCCTTCAATGACACTTTTGTCCATGTCACTGATCTTTCTGGCAAAGAAACCATCT
GCCGTGTGACTGGTGGGATGAAGGTAAAGGCAGACCGAGATGAATCCTCACCATATGCTGCTATGTTGGCTGCCCAGGAT
GTGGCCCAGAGGTGCAAGGAGCTGGGTATCACCGCCCTACACATCAAACTCCGGGCCACAGGAGGAAATAGGACCAAGAC
CCCTGGACCTGGGGCCCAGTCGGCCCTCAGAGCCCTTGCCCGCTCGGGTATGAAGATCGGGCGGATTGAGGATGTCACCC
CCATCCCCTCTGACAGCACTCGCAGGAAGGGGGGTCGCCGTGGTCGCCGTCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 194 .37 RPM
SRP007412_cerebellum 223 .23 RPM
SRP007412_heart 179 .92 RPM
SRP007412_kidney 394 .87 RPM
SRP007412_liver 302 .63 RPM
SRP007412_testis 216 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004644 possible_ortholog 2 retrogenes
retro_amel_1390, retro_amel_524,
Bos taurus ENSBTAG00000008570 possible_ortholog 2 retrogenes
retro_btau_1109, retro_btau_213,
Canis familiaris ENSCAFG00000018094 possible_ortholog 2 retrogenes
retro_cfam_1589, retro_cfam_301,
Callithrix jacchus ENSCJAG00000020981 possible_ortholog 1 retrogene
retro_cjac_89,
Cavia porcellus ENSCPOG00000024408 possible_ortholog 2 retrogenes
retro_cpor_253, retro_cpor_284,
Dipodomys ordii ENSDORG00000007146 ortholog_one2one 2 retrogenes
retro_dord_174, retro_dord_330,
Gorilla gorilla ENSGGOG00000024593 ortholog_one2one 8 retrogenes
retro_ggor_1225, retro_ggor_2080, retro_ggor_2135, retro_ggor_2199, retro_ggor_222, retro_ggor_2362, retro_ggor_2548, retro_ggor_316,
Latimeria chalumnae ENSLACG00000016164 possible_ortholog 1 retrogene
retro_lcha_12,
Loxodonta africana ENSLAFG00000031195 ortholog_one2one 2 retrogenes
retro_lafr_235, retro_lafr_67,
Macropus eugenii ENSMEUG00000014907 ortholog_one2one 1 retrogene
retro_meug_619,
Microcebus murinus ENSMICG00000002900 ortholog_one2one 2 retrogenes
retro_mmur_1569, retro_mmur_433,
Myotis lucifugus ENSMLUG00000013279 ortholog_one2one 4 retrogenes
retro_mluc_1837, retro_mluc_205, retro_mluc_2464, retro_mluc_2485,
Macaca mulatta ENSMMUG00000002848 possible_ortholog 5 retrogenes
retro_mmul_1921, retro_mmul_1983, retro_mmul_358, retro_mmul_570, retro_mmul_90,
Mustela putorius furo ENSMPUG00000013776 possible_ortholog 1 retrogene
retro_mputfur_127,
Nomascus leucogenys ENSNLEG00000010366 possible_ortholog 1 retrogene
retro_nleu_101,
Oryctolagus cuniculus ENSOCUG00000011509 possible_ortholog 1 retrogene
retro_ocun_128,
Otolemur garnettii ENSOGAG00000000721 possible_ortholog 1 retrogene
retro_ogar_286,
Procavia capensis ENSPCAG00000015960 ortholog_one2one 3 retrogenes
retro_pcap_198, retro_pcap_443, retro_pcap_73,
Rattus norvegicus ENSRNOG00000018774 possible_ortholog 10 retrogenes
retro_rnor_1313, retro_rnor_1467, retro_rnor_1532, retro_rnor_1759, retro_rnor_1875, retro_rnor_1918, retro_rnor_2181, retro_rnor_228, retro_rnor_2728, retro_rnor_873,
Sorex araneus ENSSARG00000014249 ortholog_one2one 1 retrogene
retro_sara_537,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_130 90.79 100.00
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2. retro_ptro_224 84.56 87.42
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3. retro_ptro_1086 78.10 68.21
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4. retro_ptro_2030 55.40 90.73
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5. retro_ptro_2104 75.48 98.68
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6. retro_ptro_2184 87.42 100.00
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7. retro_ptro_2367 71.31 80.79
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8. retro_ptro_2570 71.93 74.83
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Download FASTA sequences of all ENSPTRG00000017418 retrocopies