RetrogeneDB ID: | retro_ggor_2135 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:162884786..162885260(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSGGOG00000024593 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | WRQRAEMA-PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVK |
WRQ..EM..P.K.K.KKEEQVISLGPQV.EGENVFG.CHIF.SFNDTFVHVTD.SGK.T.C.V...MK.K | |
Retrocopy | WRQCTEMV<PSKRKKKKEEQVISLGPQVVEGENVFGACHIFVSFNDTFVHVTDVSGKGTTCHVAARMKMK |
Parental | ADR-DESSPYAAMLAAQDVAQRCKEL-GITALHI-KLRATGGNRTKTPGPGAQSALRALARSGMKI-GRI |
ADR.DESSP..AMLAAQ.VAQ.CKEL.GITALHI.KL.AT.GNRTK.PGP.AQSALR.LA..GMKI.G.I | |
Retrocopy | ADR<DESSPHTAMLAAQEVAQQCKEL>GITALHICKLQATAGNRTKHPGPRAQSALRTLACLGMKI>GQI |
Parental | EDVTPI-PSDSTR-RKGGRRGRRL |
EDVTPI.PSDSTR.RK....G.RL | |
Retrocopy | EDVTPI>PSDSTR<RKEDCHGHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 190 .33 RPM |
SRP007412_cerebellum | 0 .04 RPM | 150 .38 RPM |
SRP007412_heart | 0 .00 RPM | 137 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 391 .59 RPM |
SRP007412_liver | 0 .00 RPM | 366 .68 RPM |
SRP007412_testis | 0 .00 RPM | 282 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3113 |
Pan troglodytes | retro_ptro_2104 |
Pongo abelii | retro_pabe_2571 |
Macaca mulatta | retro_mmul_1983 |