RetrogeneDB ID:

retro_sara_70

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_1968:86751..86931(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSSARG00000005720
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_sara_70
GTCAAAACCTAGAATAACCATCATATCAATATGAAGATGGCGGGTCAGGATAGTTCTGTGGTGCAGTTTAAGATGAAGAG
GCAGACACCACTAAGCAAACTAATGAAAGCCTACTGTGAACAACAGGGTTTGTCAATGAGGCAGATCAGATTCCAATTTG
ATGAGCAGACAACGAAACAG

ORF - retro_sara_70 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70. %
Parental protein coverage: 63.16 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVKTENNNNINLKVAGQDGSVVQFKIKRHTPLSKLMKASCERQDLSMKQIRFQLDRQPVNE
VKT.NN..IN.K.AGQD.SVVQFK.KR.TPLSKLMKA.CE.Q.LSM.QIRFQ.D.Q....
RetrocopyVKT*NNHHINMKMAGQDSSVVQFKMKRQTPLSKLMKAYCEQQGLSMRQIRFQFDEQTTKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_70 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 49 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001886122 retrocopies
Gorilla gorilla ENSGGOG000000237693 retrocopies
Loxodonta africana ENSLAFG0000002581110 retrocopies
Monodelphis domestica ENSMODG0000000722211 retrocopies
Oryctolagus cuniculus ENSOCUG000000281955 retrocopies
Pongo abelii ENSPPYG000000297772 retrocopies
Sorex araneus ENSSARG00000005720 8 retrocopies
Sorex araneus ENSSARG000000082058 retrocopies



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